RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 KIAA0391O15091 583 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 LINC01565O15544 149 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 B3GAT3O94766 335 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 CXCL14O95715 111 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 BRCC3P46736 316 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 SNRPFP62306 86 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 POU5F1Q01860 360 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 SPATA1Q5VX52 437 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 PDE12Q6L8Q7 609 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 DCLRE1AQ6PJP8 1040 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 MRPL43Q8N983 215 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 XXYLT1Q8NBI6 393 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 GPT2Q8TD30 523 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 PDE11AQ9HCR9 933 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 PLXNA3P51805 1871 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 PDXKO00764 312 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 C2CD2LO14523 706 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 IL18RAPO95256 599 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 LRPAP1P30533 357 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 PRCPP42785 496 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 RBM10P98175 930 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 SNRNP35Q16560 246 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 SKOR2Q2VWA4 1001 aaPredicted RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 DDX27Q96GQ7 796 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 DMAC2Q9NW81 257 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 CGNQ9P2M7 1197 aaKnown RBP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 DERAQ9Y315 318 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 C2CD2Q9Y426 696 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 SF3B1O75533 1304 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 PTPRJQ12913 1337 aa16.35■□□□□ 0.21
SMPDL3A-201ENST00000368440 ZNF233A6NK53 670 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 BIN1O00499 593 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 LILRB3O75022 631 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 CYP3A5P20815 502 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 BMP6P22004 513 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 RPL9P32969 192 aaKnown RBP16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 RTP2Q5QGT7 225 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 LMBRD2Q68DH5 695 aaPredicted RBP16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 SCARA3Q6AZY7 606 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 BEST2Q8NFU1 509 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 TLE6Q9H808 572 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 CHST7Q9NS84 486 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 TRAF3IP3Q9Y228 551 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 SPTBN5Q9NRC6 3674 aaKnown RBP16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 UNC80Q8N2C7 3258 aa16.34■□□□□ 0.21
SMPDL3A-201ENST00000368440 SCN1AP35498 2009 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 KIF20AO95235 890 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 NR3C1P04150 777 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 URODP06132 367 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 GLUD2P49448 558 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 CASP4P49662 377 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 DUSP6Q16828 381 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 ZCWPW2Q504Y3 356 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 FAM171A1Q5VUB5 890 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 KIAA0319Q5VV43 1072 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 VN1R2Q8NFZ6 395 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 GOLGA5Q8TBA6 731 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 TSPAN18Q96SJ8 248 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 IRAK3Q9Y616 596 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 TSC2P49815 1807 aa16.33■□□□□ 0.21
SMPDL3A-201ENST00000368440 XPOTO43592 962 aaKnown RBP16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 EXOC3O60645 756 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 GLP2RO95838 553 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 CD44P16070 742 aaKnown RBP16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 TFAMQ00059 246 aaKnown RBP16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 DSG1Q02413 1049 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 CYP24A1Q07973 514 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 COL19A1Q14993 1142 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 USP41Q3LFD5 358 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 COBLL1Q53SF7 1204 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 CAVIN1Q6NZI2 390 aaKnown RBP16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 PRSS55Q6UWB4 352 aaPredicted RBP16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 SLC9A9Q8IVB4 645 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 PLEKHO2Q8TD55 490 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 CLSTN2Q9H4D0 955 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 KIAA1586Q9HCI6 787 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 MRPL17Q9NRX2 175 aaKnown RBP16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 CLDND1Q9NY35 253 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 STK39Q9UEW8 545 aa16.33■□□□□ 0.2
SMPDL3A-201ENST00000368440 CALUO43852 315 aaPredicted RBP16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 TKTP29401 623 aaKnown RBP16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 TFF2Q03403 129 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 DLX2Q07687 328 aaPredicted RBP16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 MORC3Q14149 939 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 CTC1Q2NKJ3 1217 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 KLHL40Q2TBA0 621 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 C9orf57Q5W0N0 161 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 CEP57Q86XR8 500 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 ADSSL1Q8N142 457 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 OR5B17Q8NGF7 314 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 RIN2Q8WYP3 895 aaPredicted RBP16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 PPP2R3CQ969Q6 453 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 DPP3Q9NY33 737 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 NUB1Q9Y5A7 615 aa16.32■□□□□ 0.2
SMPDL3A-201ENST00000368440 ANO9A1A5B4 782 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 CLASP2O75122 1294 aaKnown RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 TBX10O75333 385 aa16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 CNPP09543 421 aaKnown RBP16.31■□□□□ 0.2
SMPDL3A-201ENST00000368440 RPL17P18621 184 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms