RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 HLTFQ14527 1009 aaKnown RBP eCLIP4.33□□□□□ -1.72
USH2A-202ENST00000366942 BBS9Q3SYG4 887 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PLPP4Q5VZY2 271 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CNKSR3Q6P9H4 555 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 FBXL19Q6PCT2 694 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 DGKHQ86XP1 1220 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 UBALD2Q8IYN6 164 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 FAM160A2Q8N612 972 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 CXorf40AQ8TE69 158 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 FBXO32Q969P5 355 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ALKBH8Q96BT7 664 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 EPS8L2Q9H6S3 715 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TRIM10Q9UDY6 481 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CNOT8Q9UFF9 292 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 CPSF1Q10570 1443 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 PLA2R1Q13018 1463 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PNMA6FA0A0J9YX94 578 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ADM5C9JUS6 153 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 YKT6O15498 198 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ASS1P00966 412 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 SMPD1P17405 629 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PTPN2P17706 415 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 MAPK8P45983 427 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 NPTX2P47972 431 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TAF6P49848 677 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 FOXK1P85037 733 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ILF3Q12906 894 aaKnown RBP eCLIP4.33□□□□□ -1.72
USH2A-202ENST00000366942 TBX2Q13207 712 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 TDGQ13569 410 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CLEC16AQ2KHT3 1053 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ZMYM1Q5SVZ6 1142 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PDSS1Q5T2R2 415 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GKAP1Q5VSY0 366 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 MTFR2Q6P444 385 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 COLGALT2Q8IYK4 626 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TDHQ8IZJ6 230 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GPR152Q8TDT2 470 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 KCNN1Q92952 543 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 HES6Q96HZ4 224 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RAD9AQ99638 391 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 SPATC1LQ9H0A9 340 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 IGSF9Q9P2J2 1179 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ZFP37Q9Y6Q3 630 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 ATP7AQ04656 1500 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 C2orf71A6NGG8 1288 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 F5H5T6 163 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 KIF2AO00139 706 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 PSMD3O43242 534 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 AP5Z1O43299 807 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PRPSAP2O60256 369 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TRAK2O60296 914 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 IL18RAPO95256 599 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CER1O95813 267 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 LTFP02788 710 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PDGFRAP16234 1089 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RGS4P49798 205 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RENBPP51606 427 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ACSM2AQ08AH3 577 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TBCELQ5QJ74 424 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 OGFOD2Q6N063 350 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 BBS7Q8IWZ6 715 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GJD3Q8N144 294 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CEP70Q8NHQ1 597 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GOT1L1Q8NHS2 421 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 FRS2Q8WU20 508 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RAPGEF5Q92565 580 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RMDN1Q96DB5 314 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PHACTR3Q96KR7 559 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 MYCBPQ99417 103 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 ACE2Q9BYF1 805 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 CTTNBP2NLQ9P2B4 639 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 VPS4AQ9UN37 437 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GDAQ9Y2T3 454 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RIC1Q4ADV7 1423 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 TLR2O60603 784 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 KATNA1O75449 491 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 CNTN5O94779 1100 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 SGPL1O95470 568 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 KRT14P02533 472 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 AFPP02771 609 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 NR3C2P08235 984 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 FGFR1P11362 822 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 COX7A2P14406 83 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ATP5DP30049 168 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 ACADSBP45954 432 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 SULT2A1Q06520 285 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 SLC12A1Q13621 1099 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 NDUFA9Q16795 377 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 GJC2Q5T442 439 aaPredicted RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 TMCO4Q5TGY1 634 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 SZRD1Q7Z422 152 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 P4HA3Q7Z4N8 544 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 RBM23Q86U06 439 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 GPBP1Q86WP2 473 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 DIS3L2Q8IYB7 885 aaKnown RBP4.33□□□□□ -1.72
USH2A-202ENST00000366942 SCAIQ8N9R8 606 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 KBTBD3Q8NAB2 608 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 DNERQ8NFT8 737 aa4.33□□□□□ -1.72
USH2A-202ENST00000366942 TADA1Q96BN2 335 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms