RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 NAMPTP43490 491 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 CLCNKBP51801 687 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 ROR1Q01973 937 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 SPEM2Q0P670 501 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 PPP2R5AQ15172 486 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 UPP1Q16831 310 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 PRSS36Q5K4E3 855 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 CYP4A22Q5TCH4 519 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 PDZD4Q76G19 769 aaPredicted RBP15.24■□□□□ 0.03
VPS29-201ENST00000360579 TCEAL8Q8IYN2 117 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 ELMOD1Q8N336 334 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 DEPTORQ8TB45 409 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 FAM3CQ92520 227 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 NACC1Q96RE7 527 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 CORO1BQ9BR76 489 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 TUFT1Q9NNX1 390 aa15.24■□□□□ 0.03
VPS29-201ENST00000360579 TTLL13PA6NNM8 815 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 ATF2P15336 505 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 PSMC3P17980 439 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 CNR2P34972 360 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 EFNA5P52803 228 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 NR5A1Q13285 461 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 GRM2Q14416 872 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 PPM1JQ5JR12 505 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 FAM78AQ5JUQ0 283 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 C1orf228Q6PIY5 440 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 PRR23BQ6ZRT6 265 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 LEMD2Q8NC56 503 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 DEPDC1BQ8WUY9 529 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 DDX1Q92499 740 aaKnown RBP15.23■□□□□ 0.03
VPS29-201ENST00000360579 SMARCD2Q92925 531 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 MSANTD3Q96H12 275 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 ASB16Q96NS5 453 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 CCDC113Q9H0I3 377 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 CXCL16Q9H2A7 254 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 LMAN1LQ9HAT1 526 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 CYP4F11Q9HBI6 524 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 ZNF334Q9HCZ1 680 aaPredicted RBP15.23■□□□□ 0.03
VPS29-201ENST00000360579 TOPORSQ9NS56 1045 aaPredicted RBP15.23■□□□□ 0.03
VPS29-201ENST00000360579 GJB4Q9NTQ9 266 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 SLC38A7Q9NVC3 462 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 PIAS3Q9Y6X2 628 aa15.23■□□□□ 0.03
VPS29-201ENST00000360579 FAM205CA6NFA0 338 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 H7C4K7 107 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 SYN3O14994 580 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 SPATA31C1P0DKV0 1188 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 LIG1P18858 919 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 GDI1P31150 447 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 CXCL12P48061 93 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 YARSP54577 528 aaKnown RBP15.22■□□□□ 0.03
VPS29-201ENST00000360579 MLLT6P55198 1093 aaPredicted RBP15.22■□□□□ 0.03
VPS29-201ENST00000360579 SIM2Q14190 667 aaPredicted RBP15.22■□□□□ 0.03
VPS29-201ENST00000360579 CSRP2Q16527 193 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 LPAL2Q16609 132 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 GLRA4Q5JXX5 417 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 TPGS2Q68CL5 300 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 IQCEQ6IPM2 695 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 MAP4K3Q8IVH8 894 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 TNFRSF25Q93038 417 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 MTMR9Q96QG7 549 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 SEMA4GQ9NTN9 838 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 ORC3Q9UBD5 711 aaPredicted RBP15.22■□□□□ 0.03
VPS29-201ENST00000360579 MAFFQ9ULX9 164 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.22■□□□□ 0.03
VPS29-201ENST00000360579 NOTCH4Q99466 2003 aa15.22■□□□□ 0.03
VPS29-201ENST00000360579 F5P12259 2224 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 VWA8A3KMH1 1905 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 A0A087WWV3 80 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.21■□□□□ 0.03
VPS29-201ENST00000360579 WDR27A2RRH5 827 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 ZNF263O14978 683 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 PFKFB2O60825 505 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 CYP11B2P19099 503 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 BRCC3P46736 316 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 LRRC32Q14392 662 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 ATF7IP2Q5U623 682 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 EEF1DP3Q658K8 133 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 PADI6Q6TGC4 694 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 CD300LGQ6UXG3 332 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 CATSPER3Q86XQ3 398 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 SPEM1Q8N4L4 309 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 ERMNQ8TAM6 284 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 BSNDQ8WZ55 320 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 E2F7Q96AV8 911 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 CHAMP1Q96JM3 812 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 IFT74Q96LB3 600 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 ZNF512Q96ME7 567 aaPredicted RBP15.21■□□□□ 0.03
VPS29-201ENST00000360579 DCBLD2Q96PD2 775 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 POLR3CQ9BUI4 534 aaPredicted RBP15.21■□□□□ 0.03
VPS29-201ENST00000360579 GPR88Q9GZN0 384 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 TRPV4Q9HBA0 871 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 INSL5Q9Y5Q6 135 aa15.21■□□□□ 0.03
VPS29-201ENST00000360579 SMIM28A0A1B0GU29 152 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 ARHGEF35A5YM69 484 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 I3L4J1 428 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 PAPSS2O95340 614 aaPredicted RBP15.2■□□□□ 0.02
VPS29-201ENST00000360579 VITQ6UXI7 678 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 PRR23CQ6ZRP0 262 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.2■□□□□ 0.02
VPS29-201ENST00000360579 MFSD6LQ8IWD5 586 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms