RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 SLC25A13Q9UJS0 675 aa10.71□□□□□ -0.7
CLIP1-202ENST00000358808 CYP2D7A0A087X1C5 515 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 PYGMP11217 842 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 KRT76Q01546 638 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 TWF1Q12792 350 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 MLXIPLQ9NP71 852 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 KRCC1Q9NPI7 259 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-202ENST00000358808 PALMO75781 387 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ATP5HO75947 161 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 KRT31Q15323 416 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 HIST2H2ACQ16777 129 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-202ENST00000358808 SGO1Q5FBB7 561 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 HIST2H2AA3Q6FI13 130 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 PI16Q6UXB8 463 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 DIABLOQ9NR28 239 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ZC3H7BQ9UGR2 993 aaKnown RBP10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ADAMTS1Q9UHI8 967 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 DEPDC5O75140 1603 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 EIF3DO15371 548 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLIP1-202ENST00000358808 H2AFYO75367 372 aaKnown RBP10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF438Q7Z4V0 828 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 SFR1Q86XK3 245 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ZNF614Q8N883 585 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ENAHQ8N8S7 591 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-202ENST00000358808 PUS7LQ9H0K6 701 aaKnown RBP10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ARHGEF38Q9NXL2 777 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 SPATA31A1Q5TZJ5 1347 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ASB14A6NK59 587 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 CDH6P55285 790 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 TRADDQ15628 312 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 KYAT1Q16773 422 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 MGAT5BQ3V5L5 792 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 SAAL1Q96ER3 474 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 CLMNQ96JQ2 1002 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 ARHGEF3Q9NR81 526 aa10.7□□□□□ -0.7
CLIP1-202ENST00000358808 USP17L10C9JJH3 530 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 CFAP99D6REC4 459 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ANKRD65E5RJM6 399 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 STAT3P40763 770 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 SERPINB4P48594 390 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 MRPS25P82663 173 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 HLFQ16534 295 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 SARM1Q6SZW1 724 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 SPASTQ9UBP0 616 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 FBXO2Q9UK22 296 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 A0A1W2PQ27 194 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 A0A1W2PQ64 194 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 A0A1W2PQD8 194 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 HOXA7P31268 230 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 MTFR1Q15390 333 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 PCSK7Q16549 785 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 KLHL24Q6TFL4 600 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 BARGINQ6ZT62 677 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 CYFIP1Q7L576 1253 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 DGKHQ86XP1 1220 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 PABPC5Q96DU9 382 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 PAGE5Q96GU1 130 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 PNMA8BQ9ULN7 279 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 C3orf70A6NLC5 250 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 MIF4GDA9UHW6 222 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 HNRNPRO43390 633 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 PRPF3O43395 683 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 NDUFA10O95299 355 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 LRG1P02750 347 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 NR3C1P04150 777 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ATP6V1C1P21283 382 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 RPS7P62081 194 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 RASGRF1Q13972 1273 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 TXNRD1Q16881 649 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 PODNQ7Z5L7 613 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 CYGBQ8WWM9 190 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 AGAP3Q96P47 875 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 GRIN3BO60391 1043 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 HPGDP15428 266 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 CDC25BP30305 580 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ALDH18A1P54886 795 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 YWHAZP63104 245 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ATP11CQ8NB49 1132 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 TSPAN17Q96FV3 270 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 VPS50Q96JG6 964 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 HSPBP1Q9NZL4 362 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 P4HA2O15460 535 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 AKAP10O43572 662 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 TFRCP02786 760 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 CAPN1P07384 714 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ERVK-10P10266 1014 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 CLCN6P51797 869 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 VAMP7P51809 220 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ACTR2P61160 394 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 SFSWAPQ12872 951 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 RALGDSQ12967 914 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 CDC16Q13042 620 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 R3HDM1Q15032 1099 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 TSC22D1Q15714 1073 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 RIN3Q8TB24 985 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 ASZ1Q8WWH4 475 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 TMA16Q96EY4 203 aaKnown RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 PARD6BQ9BYG5 372 aa10.69□□□□□ -0.7
CLIP1-202ENST00000358808 COPS7BQ9H9Q2 264 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-202ENST00000358808 SCUBE2Q9NQ36 999 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms