RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TUBGCP4Q9UGJ1 667 aa20.04■□□□□ 0.8
CLN3-202ENST00000355477 PPP1R37O75864 691 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 PAPLNO95428 1278 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 RPL9P32969 192 aaKnown RBP20.03■□□□□ 0.8
CLN3-202ENST00000355477 ZXDAP98168 799 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 KCNA1Q09470 495 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 ZBTB6Q15916 424 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 E2F4Q16254 413 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 AXDND1Q5T1B0 1012 aaPredicted RBP20.03■□□□□ 0.8
CLN3-202ENST00000355477 SHC4Q6S5L8 630 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 ZNF707Q96C28 371 aaPredicted RBP20.03■□□□□ 0.8
CLN3-202ENST00000355477 MSTO1Q9BUK6 570 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 MRPL44Q9H9J2 332 aaKnown RBP20.03■□□□□ 0.8
CLN3-202ENST00000355477 DPP7Q9UHL4 492 aa20.03■□□□□ 0.8
CLN3-202ENST00000355477 PRR33A8MZF0 331 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 TRAPPC3O43617 180 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 CUTAO60888 179 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 ADRB2P07550 413 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 GAP43P17677 238 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 ABCD1P33897 745 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 OR1D2P34982 312 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 KYAT1Q16773 422 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 PDXDC1Q6P996 788 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 FGFBP2Q9BYJ0 223 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 MTRRQ9UBK8 725 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 SEL1LQ9UBV2 794 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 FBXW11Q9UKB1 542 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 CPSF3Q9UKF6 684 aaKnown RBP20.02■□□□□ 0.8
CLN3-202ENST00000355477 STYXL1Q9Y6J8 313 aa20.02■□□□□ 0.8
CLN3-202ENST00000355477 SCN1AP35498 2009 aa20.02■□□□□ 0.79
CLN3-202ENST00000355477 NOTCH4Q99466 2003 aa20.02■□□□□ 0.79
CLN3-202ENST00000355477 ZDBF2Q9HCK1 2354 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 ZNF318Q5VUA4 2279 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 FRMD3A2A2Y4 597 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 IDEP14735 1019 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 ACOT2P49753 483 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 GUCY2FP51841 1108 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 CASP5P51878 434 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 DNM1Q05193 864 aaKnown RBP20.01■□□□□ 0.79
CLN3-202ENST00000355477 PPP2R3AQ06190 1150 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 RAB33AQ14088 237 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 PTPN21Q16825 1174 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 ELMSAN1Q6PJG2 1045 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 CCDC149Q6ZUS6 474 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 SMG7Q92540 1137 aaKnown RBP20.01■□□□□ 0.79
CLN3-202ENST00000355477 KIF12Q96FN5 646 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 RHOBTB2Q9BYZ6 727 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 RPF1Q9H9Y2 349 aaKnown RBP20.01■□□□□ 0.79
CLN3-202ENST00000355477 PANK4Q9NVE7 773 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 LIMD1Q9UGP4 676 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 USTQ9Y2C2 406 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 CDY1Q9Y6F8 540 aa20.01■□□□□ 0.79
CLN3-202ENST00000355477 ZMYND10O75800 440 aa20■□□□□ 0.79
CLN3-202ENST00000355477 ADSSP30520 456 aa20■□□□□ 0.79
CLN3-202ENST00000355477 VARS2Q5ST30 1063 aaKnown RBP20■□□□□ 0.79
CLN3-202ENST00000355477 ADALQ6DHV7 355 aa20■□□□□ 0.79
CLN3-202ENST00000355477 CYP26C1Q6V0L0 522 aa20■□□□□ 0.79
CLN3-202ENST00000355477 TRIM67Q6ZTA4 783 aa20■□□□□ 0.79
CLN3-202ENST00000355477 ANKS3Q6ZW76 656 aa20■□□□□ 0.79
CLN3-202ENST00000355477 ZDHHC14Q8IZN3 488 aa20■□□□□ 0.79
CLN3-202ENST00000355477 TDRD5Q8NAT2 981 aaKnown RBP20■□□□□ 0.79
CLN3-202ENST00000355477 DHX58Q96C10 678 aa20■□□□□ 0.79
CLN3-202ENST00000355477 FAM212AQ96EL1 285 aa20■□□□□ 0.79
CLN3-202ENST00000355477 PRKD2Q9BZL6 878 aa20■□□□□ 0.79
CLN3-202ENST00000355477 WDR6Q9NNW5 1121 aaKnown RBP20■□□□□ 0.79
CLN3-202ENST00000355477 OLFML3Q9NRN5 406 aa20■□□□□ 0.79
CLN3-202ENST00000355477 KBTBD4Q9NVX7 518 aa20■□□□□ 0.79
CLN3-202ENST00000355477 ZDHHC7Q9NXF8 308 aa20■□□□□ 0.79
CLN3-202ENST00000355477 PCDHA7Q9UN72 937 aa20■□□□□ 0.79
CLN3-202ENST00000355477 NUB1Q9Y5A7 615 aa20■□□□□ 0.79
CLN3-202ENST00000355477 BACE2Q9Y5Z0 518 aa20■□□□□ 0.79
CLN3-202ENST00000355477 WDFY4Q6ZS81 3184 aa20■□□□□ 0.79
CLN3-202ENST00000355477 N4BP1O75113 896 aaKnown RBP19.99■□□□□ 0.79
CLN3-202ENST00000355477 GCNT3O95395 438 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 ASGR2P07307 311 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 LRPAP1P30533 357 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 L1TD1Q5T7N2 865 aaKnown RBP19.99■□□□□ 0.79
CLN3-202ENST00000355477 JADE1Q6IE81 842 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 SLFN12LQ6IEE8 588 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 CRELD2Q6UXH1 353 aaPredicted RBP19.99■□□□□ 0.79
CLN3-202ENST00000355477 HFE2Q6ZVN8 426 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 KCNG4Q8TDN1 519 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 HVCN1Q96D96 273 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 SUSD3Q96L08 255 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 TNMDQ9H2S6 317 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 AGO2Q9UKV8 859 aaKnown RBP19.99■□□□□ 0.79
CLN3-202ENST00000355477 UBQLN1Q9UMX0 589 aaKnown RBP19.99■□□□□ 0.79
CLN3-202ENST00000355477 ZDHHC9Q9Y397 364 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 MUC6Q6W4X9 2439 aa19.99■□□□□ 0.79
CLN3-202ENST00000355477 SYN3O14994 580 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 TBC1D4O60343 1298 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 CYP3A5P20815 502 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 MCM4P33991 863 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 ME1P48163 572 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 MRPL58Q14197 206 aaKnown RBP19.98■□□□□ 0.79
CLN3-202ENST00000355477 ATL3Q6DD88 541 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 OTOP3Q7RTS5 596 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 PLCD3Q8N3E9 789 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 ZSWIM2Q8NEG5 633 aa19.98■□□□□ 0.79
CLN3-202ENST00000355477 HPS3Q969F9 1004 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms