RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 MKRN4PQ13434 485 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 HAUS6Q7Z4H7 955 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 LINC01465Q8N7H1 131 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 CD99L2Q8TCZ2 262 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 MS4A14Q96JA4 679 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 GORASP1Q9BQQ3 440 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 UPF3AQ9H1J1 476 aaKnown RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 DNAAF2Q9NVR5 837 aaKnown RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 DMAC2Q9NW81 257 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 DCDC2CA8MYV0 355 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 H3BRB1 525 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 CALUO43852 315 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 HOXD10P28358 340 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 SNRPFP62306 86 aaKnown RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 MYBPC2Q14324 1141 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 NUGGCQ68CJ6 796 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 AENQ8WTP8 325 aaKnown RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 TUT1Q9H6E5 874 aaKnown RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 TMEM206Q9H813 350 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 PREBQ9HCU5 417 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 BATF3Q9NR55 127 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 TAB2Q9NYJ8 693 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 ADGRA3Q8IWK6 1321 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 GMNCA6NCL1 334 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 MFAP3LO75121 409 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 C22orf31O95567 290 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 F2P00734 622 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ZNF286BP0CG31 522 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 GLRA2P23416 452 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 NAMPTP43490 491 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 COPB1P53618 953 aaKnown RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 MAP3K21Q5TCX8 1036 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 IER5Q5VY09 327 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 CCDC70Q6NSX1 233 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 TRAPPC11Q7Z392 1133 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 SLC9A9Q8IVB4 645 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 C12orf56Q8IXR9 622 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ASAP3Q8TDY4 903 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 TMEM143Q96AN5 459 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 CNOT6LQ96LI5 555 aaKnown RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ALS2CR12Q96Q35 445 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ACCSQ96QU6 501 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 LACRTQ9GZZ8 138 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 NOP53Q9NZM5 478 aaKnown RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 H0YCG3 227 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 HAS3O00219 553 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 SLC16A4O15374 487 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 MGRN1O60291 552 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 GNA14O95837 355 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 FESP07332 822 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 CPT1AP50416 773 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 GJA9P57773 515 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 SESN3P58005 492 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 MCCD1P59942 119 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 GUCY2DQ02846 1103 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 CACNB2Q08289 660 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ANKRD20A2Q5SQ80 823 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ANKRD20A1Q5TYW2 823 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ANKRD20A3Q5VUR7 823 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 PALB2Q86YC2 1186 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 MAP4K3Q8IVH8 894 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 PXYLP1Q8TE99 480 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 SNRNP27Q8WVK2 155 aaKnown RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 LENG1Q96BZ8 264 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 IFT74Q96LB3 600 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 KMT5AQ9NQR1 393 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ZMYND8Q9ULU4 1186 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 CORO1CQ9ULV4 474 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 TBX20Q9UMR3 447 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 LRRD1A4D1F6 860 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 RCCD1A6NED2 376 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 SEPT4O43236 478 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 INSRRP14616 1297 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 CUL3Q13618 768 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 HLTFQ14527 1009 aaKnown RBP eCLIP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 MIIPQ5JXC2 388 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 ACBD5Q5T8D3 534 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-203ENST00000354674 NFRKBQ6P4R8 1299 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 C6orf89Q6UWU4 347 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 TAS1R3Q7RTX0 852 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 RPS6KC1Q96S38 1066 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 OSBPL9Q96SU4 736 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 SYT15Q9BQS2 421 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 EPB41L5Q9HCM4 733 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 AGPAT3Q9NRZ7 376 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 HOMER3Q9NSC5 361 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 DLGAP2Q9P1A6 1054 aa10.81□□□□□ -0.68
SYNE1-203ENST00000354674 AHCYL1O43865 530 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 FKTNO75072 461 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 NR3C1P04150 777 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 SETSIPP0DME0 302 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 MCM3P25205 808 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 SKOR1P84550 965 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 ROR2Q01974 943 aaKnown RBP10.8□□□□□ -0.68
SYNE1-203ENST00000354674 TRIM32Q13049 653 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 ADAM9Q13443 819 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 DRP2Q13474 957 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 TUBGCP2Q9BSJ2 902 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 ACTR5Q9H9F9 607 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-203ENST00000354674 MAGEC2Q9UBF1 373 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms