RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 H3BRB1 525 aa15.75■□□□□ 0.11
COL17A1-201ENST00000353479 CYTH3O43739 400 aa15.75■□□□□ 0.11
COL17A1-201ENST00000353479 HSD17B4P51659 736 aa15.75■□□□□ 0.11
COL17A1-201ENST00000353479 DCP1BQ8IZD4 617 aaKnown RBP15.75■□□□□ 0.11
COL17A1-201ENST00000353479 TUT1Q9H6E5 874 aaKnown RBP15.75■□□□□ 0.11
COL17A1-201ENST00000353479 NR1D1P20393 614 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 EIF3EP60228 445 aaKnown RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 STX1BP61266 288 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 TAF1BQ53T94 588 aaPredicted RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 MPZL3Q6UWV2 235 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 PID1Q7Z2X4 250 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 CCDC197Q8NCU1 140 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 ZNF512Q96ME7 567 aaPredicted RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 CNOT10Q9H9A5 744 aaKnown RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 SLURP2P0DP57 97 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 MTMR12Q9C0I1 747 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 MRC1P22897 1456 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 A0A1W2PQJ5 194 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 ALDH1A1P00352 501 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 PNMA6AP0CW24 399 aaPredicted RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 SLC26A2P50443 739 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 CRY2Q49AN0 593 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 TADA2BQ86TJ2 420 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 PCSK9Q8NBP7 692 aaKnown RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 RAB3IPQ96QF0 476 aaPredicted RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 SETD4Q9NVD3 440 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 PAPOLAP51003 745 aaKnown RBP15.74■□□□□ 0.11
COL17A1-201ENST00000353479 RAD9BQ6WBX8 426 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 KCNF1Q9H3M0 494 aa15.74■□□□□ 0.11
COL17A1-201ENST00000353479 ZNF185O15231 689 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 STRNO43815 780 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 CSDE1O75534 798 aaKnown RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ATN1P54259 1190 aaPredicted RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 PDIA2Q13087 525 aaKnown RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ZNF235Q14590 738 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 SH2D4BQ5SQS7 431 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 RSRC1Q96IZ7 334 aaKnown RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 VCXQ9H320 206 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 A0A087WZ62 844 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 F8W8V4 182 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 PPP1R12AO14974 1030 aaPredicted RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 NOL3O60936 208 aaKnown RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 PNPLA4P41247 253 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ERVK-9P63128 1117 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ERVK-24P63145 666 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ST3GAL1Q11201 340 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 SNF8Q96H20 258 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 FDXACB1Q9BRP7 624 aaPredicted RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 AMACRQ9UHK6 382 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 TGFB3P10600 412 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 SERPINB6P35237 376 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ARSEP51690 589 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 PMS2P54278 862 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ZBED8Q8IZ13 594 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 RCOR2Q8IZ40 523 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ARRDC4Q8NCT1 418 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 MS4A14Q96JA4 679 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 VCX3BQ9H321 246 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 KRT17Q04695 432 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 CUL2Q13617 745 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 KRT33BQ14525 404 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 IZUMO3Q5VZ72 239 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 E4F1Q66K89 784 aaPredicted RBP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 POTEAQ6S8J7 498 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 NUF2Q9BZD4 464 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 MRFAP1Q9Y605 127 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 C2CD2LO14523 706 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 TXNDC9O14530 226 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 NKRFO15226 690 aaKnown RBP eCLIP15.73■□□□□ 0.11
COL17A1-201ENST00000353479 CASP2P42575 452 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ZNF720Q7Z2F6 126 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 ERGIC2Q96RQ1 377 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 EPC1Q9H2F5 836 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 SEMA6BQ9H3T3 888 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 MID2Q9UJV3 735 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 CAPN7Q9Y6W3 813 aa15.73■□□□□ 0.11
COL17A1-201ENST00000353479 FAM187AA6NFU0 413 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 DCDC2CA8MYV0 355 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 INSRRP14616 1297 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 ORC1Q13415 861 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 CHORDC1Q9UHD1 332 aaPredicted RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 SNX12Q9UMY4 172 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 PIK3C2AO00443 1686 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 COPEO14579 308 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 KRT38O76015 456 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 YY1P25490 414 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 PIGHQ14442 188 aaPredicted RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 CYP4A22Q5TCH4 519 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 KDELC2Q7Z4H8 507 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 PPM1NQ8N819 430 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 TRPM4Q8TD43 1214 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 MAGEB5Q9BZ81 275 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 A1CFQ9NQ94 594 aaKnown RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 STARD7Q9NQZ5 370 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 BFARQ9NZS9 450 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 G3BP2Q9UN86 482 aaKnown RBP15.72■□□□□ 0.11
COL17A1-201ENST00000353479 SLIT3O75094 1523 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 STAG3L1P0CL83 205 aa15.72■□□□□ 0.11
COL17A1-201ENST00000353479 LAMTOR4Q0VGL1 99 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms