RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 FAM118BQ9BPY3 351 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SPATA16Q9BXB7 569 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 DCLK3Q9C098 648 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 ZWILCHQ9H900 591 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 DDX43Q9NXZ2 648 aaKnown RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 PDP2Q9P2J9 529 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 DCTN4Q9UJW0 460 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 PHF24Q9UPV7 400 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 DNM3Q9UQ16 869 aa7.22□□□□□ -1.25
VPS39-202ENST00000348544 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS39-202ENST00000348544 MYH14Q7Z406 1995 aaKnown RBP7.22□□□□□ -1.25
VPS39-202ENST00000348544 A0A1W2PPM1 405 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 SLC26A4O43511 780 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 TYROBPO43914 113 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 CCDC22O60826 627 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 CYP1A2P05177 515 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 ETS2P15036 469 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 AMPD1P23109 780 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 RPA1P27694 616 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 EVA1CP58658 441 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 DLG4P78352 724 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 OVGP1Q12889 678 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 ASPRV1Q53RT3 343 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 RELL1Q8IUW5 271 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 ZNF276Q8N554 614 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 MORC4Q8TE76 937 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 SLC5A5Q92911 643 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 OPTNQ96CV9 577 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 DTNBP1Q96EV8 351 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 RTFDC1Q9BY42 306 aaPredicted RBP7.21□□□□□ -1.25
VPS39-202ENST00000348544 PSTPIP2Q9H939 334 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 UBE2TQ9NPD8 197 aaPredicted RBP7.21□□□□□ -1.25
VPS39-202ENST00000348544 OLFML3Q9NRN5 406 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 LRRC4BQ9NT99 713 aa7.21□□□□□ -1.25
VPS39-202ENST00000348544 NOCTQ9UK39 431 aaKnown RBP7.21□□□□□ -1.25
VPS39-202ENST00000348544 ROBO1Q9Y6N7 1651 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 CYP3A7-CYP3A51PA0A087WV96 503 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 EXOC1LA0A1B0GW35 172 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 CFAP69A5D8W1 941 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 USP17L10C9JJH3 530 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 MAP3K7O43318 606 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 CREB3O43889 395 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 TBCAO75347 108 aaKnown RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 ABHD2P08910 425 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 CA4P22748 312 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 CYP3A7P24462 503 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 MAGEA4P43358 317 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 SCNN1BP51168 640 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 SLC18A1P54219 525 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 CAV1Q03135 178 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 MYBPC3Q14896 1274 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 FASTKD3Q14CZ7 662 aaKnown RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 NFIL3Q16649 462 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 LVRNQ6Q4G3 990 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 RIBC1Q8N443 379 aaPredicted RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 EPS8L1Q8TE68 723 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 FIZ1Q96SL8 496 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 MKNK1Q9BUB5 465 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 ASCC2Q9H1I8 757 aaPredicted RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 C12orf65Q9H3J6 166 aaKnown RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 SYNCQ9H7C4 482 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 FBXO6Q9NRD1 293 aaPredicted RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 DMAC2Q9NW81 257 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 CHCHD3Q9NX63 227 aaKnown RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 MTMR4Q9NYA4 1195 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 TAS2R1Q9NYW7 299 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 TBC1D30Q9Y2I9 924 aa7.21□□□□□ -1.26
VPS39-202ENST00000348544 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.21□□□□□ -1.26
VPS39-202ENST00000348544 POC1B-GALNT4F8VUJ3 575 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 EIF3DO15371 548 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS39-202ENST00000348544 GYG2O15488 501 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 HNRNPCL1O60812 293 aaKnown RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 ADSSP30520 456 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 INHBCP55103 352 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 RPS8P62241 208 aaKnown RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZNF543Q08ER8 600 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 PPP2R5CQ13362 524 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ITPK1Q13572 414 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 THOC5Q13769 683 aaKnown RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 GSTA3Q16772 222 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 PRR16Q569H4 304 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 HP1BP3Q5SSJ5 553 aaPredicted RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 IZUMO3Q5VZ72 239 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 RFX8Q6ZV50 586 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 SYDE1Q6ZW31 735 aaPredicted RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 HS2ST1Q7LGA3 356 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 SDCCAG8Q86SQ7 713 aaPredicted RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 RDH13Q8NBN7 331 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 CRYGNQ8WXF5 182 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 AKT1S1Q96B36 256 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 LENG9Q96B70 501 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 NR1H4Q96RI1 486 aaPredicted RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 HAPLN3Q96S86 360 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 RBM15Q96T37 977 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS39-202ENST00000348544 CCDC77Q9BR77 488 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 MAK16Q9BXY0 300 aaKnown RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 ANO3Q9BYT9 981 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZNF287Q9HBT7 754 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 PREBQ9HCU5 417 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.2□□□□□ -1.262e-9■■■■■ 257.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms