RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 C1orf112Q9NSG2 853 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 TRMT13Q9NUP7 481 aaKnown RBP4.46□□□□□ -1.7
MCF2-201ENST00000338585 SAGE1Q9NXZ1 904 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 SNTG2Q9NY99 539 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 SALL4Q9UJQ4 1053 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 PIN4Q9Y237 131 aaKnown RBP4.46□□□□□ -1.7
MCF2-201ENST00000338585 NOC2LQ9Y3T9 749 aaKnown RBP4.46□□□□□ -1.7
MCF2-201ENST00000338585 NUB1Q9Y5A7 615 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 CDY2AQ9Y6F7 541 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 TMCO5BA8MYB1 307 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 RIOK3O14730 519 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 B4GALT4O60513 344 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 GNRH1P01148 92 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CHRNA1P02708 482 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 TMEM191BP0C7N4 346 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 AKAP5P24588 427 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CRYBB1P53674 252 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 NOP14P78316 857 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 MRPS6P82932 125 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 ITGA7Q13683 1181 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 PTGISQ16647 500 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 DUOXA2Q1HG44 320 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 WDR44Q5JSH3 913 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 UBXN11Q5T124 520 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 TAF3Q5VWG9 929 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 TAF2Q6P1X5 1199 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NOTUMQ6P988 496 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SLC27A1Q6PCB7 646 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 RNF180Q86T96 592 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NOP9Q86U38 636 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 SLC47A2Q86VL8 602 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 FAM228AQ86W67 206 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 FAM71AQ8IYT1 594 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SLC35F6Q8N357 371 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 C1orf127Q8N9H9 656 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 KIF18AQ8NI77 898 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 EPS8L1Q8TE68 723 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 U2AF1L4Q8WU68 220 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 ADPGKQ9BRR6 497 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 APOL6Q9BWW8 343 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 UNC93B1Q9H1C4 597 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 HMX1Q9NP08 348 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 TAS2R14Q9NYV8 317 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SIX4Q9UIU6 781 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NAGPAQ9UK23 515 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NOCTQ9UK39 431 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 NENFQ9UMX5 172 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CEP350Q5VT06 3117 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 KIF2AO00139 706 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 KIF5CO60282 957 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ZC3H11AO75152 810 aaKnown RBP eCLIP4.45□□□□□ -1.7
MCF2-201ENST00000338585 IL18RAPO95256 599 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 MOCS3O95396 460 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ASS1P00966 412 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 TFRCP02786 760 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 KRT19P08727 400 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 KRT5P13647 590 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CHRNB2P17787 502 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ACO1P21399 889 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 THPOP40225 353 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 GRM5P41594 1212 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CDC42EP1Q00587 391 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 GCNT1Q02742 428 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 KIF5AQ12840 1032 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CUL2Q13617 745 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 HSP90AA2PQ14568 343 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 GLRA4Q5JXX5 417 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ALKBH5Q6P6C2 394 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 SCARA5Q6ZMJ2 495 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SESTD1Q86VW0 696 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 NME8Q8N427 588 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 PCSK9Q8NBP7 692 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 SLC30A5Q8TAD4 765 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 CXorf38Q8TB03 319 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ZMAT2Q96NC0 199 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 ACAP3Q96P50 834 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 PCDHB18PQ96TA0 734 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 AGPAT1Q99943 283 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 SENP6Q9GZR1 1112 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 XYLT2Q9H1B5 865 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 TRPV6Q9H1D0 765 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 AGO3Q9H9G7 860 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 SEPT11Q9NVA2 429 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 KLK14Q9P0G3 267 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 POLIQ9UNA4 740 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 TRPV2Q9Y5S1 764 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 BZW2Q9Y6E2 419 aaKnown RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 CAPN6Q9Y6Q1 641 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 TRIP11Q15643 1979 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 MROH7Q68CQ1 1323 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 A0A1W2PQ45 241 aaPredicted RBP4.45□□□□□ -1.7
MCF2-201ENST00000338585 A0A1W2PQY0 241 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 MEIS3P2A8K0S8 358 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 PPEF2O14830 753 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 BUB1O43683 1085 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 KRT86O43790 486 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 RECQL4O94761 1208 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 TNNC2P02585 160 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 ITGB3P05106 788 aa4.45□□□□□ -1.7
MCF2-201ENST00000338585 MMEP08473 750 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms