RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SALL4Q9UJQ4 1053 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 NUB1Q9Y5A7 615 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 GRIN2DO15399 1336 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 MACROD2A1Z1Q3 448 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 CTAGE9A4FU28 777 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 SGPL1O95470 568 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 TNNC2P02585 160 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 ACO1P21399 889 aaKnown RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 TNFAIP3P21580 790 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 TBXAS1P24557 533 aaPredicted RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 SERINC5Q86VE9 423 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 SLAIN1Q8ND83 568 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 DHX38Q92620 1227 aaKnown RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 ACAP3Q96P50 834 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 ARID3AQ99856 593 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 PACSIN1Q9BY11 444 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 CELF4Q9BZC1 486 aaKnown RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 IMPG2Q9BZV3 1241 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 CNTN6Q9UQ52 1028 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 URI1O94763 535 aaPredicted RBP16.62■□□□□ 0.25
LIMS1-202ENST00000338045 RPLP2P05387 115 aaKnown RBP16.62■□□□□ 0.25
LIMS1-202ENST00000338045 NFICP08651 508 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 USP8P40818 1118 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 SGSM1Q2NKQ1 1148 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 NOP9Q86U38 636 aaKnown RBP16.62■□□□□ 0.25
LIMS1-202ENST00000338045 SLC47A2Q86VL8 602 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 CD302Q8IX05 232 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 TRIM58Q8NG06 486 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 SLC20A1Q8WUM9 679 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 NAPGQ99747 312 aaPredicted RBP16.62■□□□□ 0.25
LIMS1-202ENST00000338045 XYLT2Q9H1B5 865 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 PLEKHA5Q9HAU0 1116 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 C2CD2Q9Y426 696 aa16.62■□□□□ 0.25
LIMS1-202ENST00000338045 NPTXRO95502 500 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 CYP11B1P15538 503 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 CHRNB2P17787 502 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 MYL6P60660 151 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 MRPS6P82932 125 aaKnown RBP16.61■□□□□ 0.25
LIMS1-202ENST00000338045 JADE1Q6IE81 842 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 RNF180Q86T96 592 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 NT5DC4Q86YG4 428 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 CXorf38Q8TB03 319 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 U2AF1L4Q8WU68 220 aaKnown RBP16.61■□□□□ 0.25
LIMS1-202ENST00000338045 DDX1Q92499 740 aaKnown RBP16.61■□□□□ 0.25
LIMS1-202ENST00000338045 CCDC94Q9BW85 323 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-202ENST00000338045 SIX4Q9UIU6 781 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 CAPN6Q9Y6Q1 641 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 UMODL1Q5DID0 1318 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 TACC1O75410 805 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 CABYRO75952 493 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 INHAP05111 366 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 H2AFZP0C0S5 128 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 TRPC3Q13507 836 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 H2AFVQ71UI9 128 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 RSPH3Q86UC2 560 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 PALB2Q86YC2 1186 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 RPUSD2Q8IZ73 545 aaKnown RBP16.61■□□□□ 0.25
LIMS1-202ENST00000338045 UBR7Q8N806 425 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 C1orf127Q8N9H9 656 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 TAF4BQ92750 862 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 FAXDC2Q96IV6 333 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 EIF2AQ9BY44 585 aaKnown RBP16.61■□□□□ 0.25
LIMS1-202ENST00000338045 MRFAP1Q9Y605 127 aa16.61■□□□□ 0.25
LIMS1-202ENST00000338045 UQCRHLA0A096LP55 91 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 ANO9A1A5B4 782 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 UQCRHP07919 91 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 PDE6CP51160 858 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 AMPD2Q01433 879 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 CDR2Q01850 454 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 TUBB2AQ13885 445 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 FAM47CQ5HY64 1035 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 LHX8Q68G74 356 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 WNT8BQ93098 351 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 NOX5Q96PH1 765 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 TUBB2BQ9BVA1 445 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 NIF3L1Q9GZT8 377 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 ACP6Q9NPH0 428 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 PRDM4Q9UKN5 801 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 PIN4Q9Y237 131 aaKnown RBP16.6■□□□□ 0.25
LIMS1-202ENST00000338045 TRPV2Q9Y5S1 764 aa16.6■□□□□ 0.25
LIMS1-202ENST00000338045 A0A0A6YYK5 440 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-202ENST00000338045 M0QZ92 97 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 CTIFO43310 598 aaKnown RBP16.59■□□□□ 0.25
LIMS1-202ENST00000338045 MOCS3O95396 460 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 KRT5P13647 590 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 BPIFB4P59827 614 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 FMO1Q01740 532 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 TMEM132DQ14C87 1099 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 FAM228AQ86W67 206 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 ISCUQ9H1K1 167 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 VRTNQ9H8Y1 702 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 DERAQ9Y315 318 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 PCDHB2Q9Y5E7 798 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 CDY2AQ9Y6F7 541 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 CITO14578 2027 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 MOXD2PA6NHM9 499 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 TMEM253P0C7T8 217 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 GZMAP12544 262 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 GRK4P32298 578 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 ACLYP53396 1101 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms