RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 C17orf80Q9BSJ5 609 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 OSBPL3Q9H4L5 887 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 UBAP1Q9NZ09 502 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 SH3BP1Q9Y3L3 701 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 IGSF1Q8N6C5 1336 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 TPD52L2O43399 206 aaKnown RBP13.27□□□□□ -0.29
SDC3-201ENST00000336798 PLIN5Q00G26 463 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 TAF1CQ15572 869 aaPredicted RBP13.27□□□□□ -0.29
SDC3-201ENST00000336798 ANO5Q75V66 913 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 NLRP14Q86W24 1093 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 TNIP3Q96KP6 325 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 DDX50Q9BQ39 737 aaKnown RBP13.27□□□□□ -0.29
SDC3-201ENST00000336798 PCMTD2Q9NV79 361 aa13.27□□□□□ -0.29
SDC3-201ENST00000336798 USP10Q14694 798 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 LONRF1Q17RB8 773 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 CLEC4FQ8N1N0 589 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 TBC1D19Q8N5T2 526 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 ZNF280CQ8ND82 737 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 PTPRN2Q92932 1015 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 L3MBTL3Q96JM7 780 aaPredicted RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 TASP1Q9H6P5 420 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 BARHL2Q9NY43 387 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 AFF2P51816 1311 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 COL15A1P39059 1388 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 GUCA1CO95843 209 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 MRPS15P82914 257 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 PARP9Q8IXQ6 854 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 FAM162AQ96A26 154 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 MYO3BQ8WXR4 1341 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 TTC26A0AVF1 554 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 TCP11X1B4DZS4 312 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 MYBL1P10243 752 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 LAYNQ6UX15 382 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 TMEM117Q9H0C3 514 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 USE1Q9NZ43 259 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 DBR1Q9UK59 544 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 FAM32AQ9Y421 112 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 PCDHA10Q9Y5I2 948 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 C3orf70A6NLC5 250 aaPredicted RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 NPM3O75607 178 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 GUCY1A3Q02108 690 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 SMTNL2Q2TAL5 461 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 SLC30A9Q6PML9 568 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 DHX40Q8IX18 779 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 MICALL2Q8IY33 904 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 XPO7Q9UIA9 1087 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 EEF2KO00418 725 aaKnown RBP13.26□□□□□ -0.29
SDC3-201ENST00000336798 ZRANB3Q5FWF4 1079 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 SARM1Q6SZW1 724 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 SRLQ86TD4 932 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 ADCK1Q86TW2 530 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 ZNF555Q8NEP9 628 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 SLC7A14Q8TBB6 771 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 TRIM51Q9BSJ1 452 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 OSBPL10Q9BXB5 764 aa13.26□□□□□ -0.29
SDC3-201ENST00000336798 NR1H3Q13133 447 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 CUL4AQ13619 759 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 AMHR2Q16671 573 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 PLA2G4FQ68DD2 849 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.25□□□□□ -0.29
SDC3-201ENST00000336798 TSSK1BQ9BXA7 367 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 ASCC2Q9H1I8 757 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 FAM96AQ9H5X1 160 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 RHBDL2Q9NX52 303 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 PRR23D1E9PI22 279 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 PRR23D2P0DMB1 279 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 C4orf33Q8N1A6 199 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 GALNT4Q8N4A0 578 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 IPMKQ8NFU5 416 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 SHCBP1LQ9BZQ2 653 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 TMEM51Q9NW97 253 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 DTNAQ9Y4J8 743 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 ASB14A6NK59 587 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 H7C1W4 665 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 GGPS1O95749 300 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 GUCY1A2P33402 732 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 PGM1P36871 562 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 CCDC33Q8N5R6 958 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 C10orf53Q8N6V4 93 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 FLCNQ8NFG4 579 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 TAF1DQ9H5J8 278 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 RAB6BQ9NRW1 208 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 C20orf96Q9NUD7 363 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 SLC30A1Q9Y6M5 507 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 ATMINO43313 823 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 TCF3P15923 654 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 PDGFRAP16234 1089 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 TMEM132DQ14C87 1099 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 PTRHD1Q6GMV3 140 aaKnown RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 SIRT2Q8IXJ6 389 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 LRRC71Q8N4P6 559 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 ACSF2Q96CM8 615 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 TRIM62Q9BVG3 475 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 CHORDC1Q9UHD1 332 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 TRPC1P48995 793 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 ZBTB10Q96DT7 871 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 H2AFY2Q9P0M6 372 aaPredicted RBP13.25□□□□□ -0.29
SDC3-201ENST00000336798 ATP11BQ9Y2G3 1177 aa13.25□□□□□ -0.29
SDC3-201ENST00000336798 RASSF10A6NK89 507 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms