RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FEZF2Q8TBJ5 459 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 RIN2Q8WYP3 895 aaPredicted RBP17.22■□□□□ 0.35
CLN3-201ENST00000333496 POMGNT1Q8WZA1 660 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 DDX27Q96GQ7 796 aaKnown RBP17.22■□□□□ 0.35
CLN3-201ENST00000333496 PAGE5Q96GU1 130 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 APOL5Q9BWW9 433 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 GOLPH3LQ9H4A5 285 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 CD320Q9NPF0 282 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 USP15Q9Y4E8 981 aaPredicted RBP17.22■□□□□ 0.35
CLN3-201ENST00000333496 A0A1W2PQ27 194 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 A0A1W2PQ64 194 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 A0A1W2PQD8 194 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 I3L4J1 428 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 KLRC4O43908 158 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 SRGAP2BP0DMP2 458 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 POSTNQ15063 836 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 NFKBIBQ15653 356 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 FAM26FQ5R3K3 315 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 KANK3Q6NY19 840 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 PPFIBP1Q86W92 1011 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 SUSD6Q92537 303 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 KIF12Q96FN5 646 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 TTPALQ9BTX7 342 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 CDH22Q9UJ99 828 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 FAM50BQ9Y247 325 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 DOCK6Q96HP0 2047 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 PVALEFA0A1B0GWK0 134 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 HOXB8P17481 243 aaPredicted RBP17.21■□□□□ 0.35
CLN3-201ENST00000333496 RPL17P18621 184 aaKnown RBP17.21■□□□□ 0.35
CLN3-201ENST00000333496 FGFR3P22607 806 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 RPL9P32969 192 aaKnown RBP17.21■□□□□ 0.35
CLN3-201ENST00000333496 SYKP43405 635 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 ELAVL2Q12926 359 aaKnown RBP17.21■□□□□ 0.35
CLN3-201ENST00000333496 JADE1Q6IE81 842 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 CEP57Q86XR8 500 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 SYCP3Q8IZU3 236 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 C12orf76Q8N812 135 aaPredicted RBP17.21■□□□□ 0.35
CLN3-201ENST00000333496 FSIP1Q8NA03 581 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 LNX1Q8TBB1 728 aaPredicted RBP17.21■□□□□ 0.35
CLN3-201ENST00000333496 ZNF507Q8TCN5 953 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 PIK3R5Q8WYR1 880 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 FAM212AQ96EL1 285 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 TMEM206Q9H813 350 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 FNIP2Q9P278 1114 aa17.21■□□□□ 0.35
CLN3-201ENST00000333496 DENND4AQ7Z401 1863 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 EIF3DO15371 548 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLN3-201ENST00000333496 ADH1AP07327 375 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 GARTP22102 1010 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 TKTP29401 623 aaKnown RBP17.2■□□□□ 0.34
CLN3-201ENST00000333496 GUCY2FP51841 1108 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 GLYCTKQ8IVS8 523 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 CLSTN3Q9BQT9 956 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 CBWD1Q9BRT8 395 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLN3-201ENST00000333496 USP25Q9UHP3 1055 aa17.2■□□□□ 0.34
CLN3-201ENST00000333496 UBQLN1Q9UMX0 589 aaKnown RBP17.2■□□□□ 0.34
CLN3-201ENST00000333496 TNFRSF10AO00220 468 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 NFICP08651 508 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 CYP3A5P20815 502 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 LRPAP1P30533 357 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 WNT7BP56706 349 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 POU5F1Q01860 360 aaKnown RBP17.19■□□□□ 0.34
CLN3-201ENST00000333496 ZP2Q05996 745 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.19■□□□□ 0.34
CLN3-201ENST00000333496 CD302Q8IX05 232 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 SCFD1Q8WVM8 642 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 SAAL1Q96ER3 474 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 FBXL18Q96ME1 805 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 TSPAN18Q96SJ8 248 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 SLC39A2Q9NP94 309 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 PRKAG3Q9UGI9 489 aa17.19■□□□□ 0.34
CLN3-201ENST00000333496 PSMD5Q16401 504 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 SPATA1Q5VX52 437 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 LILRA6Q6PI73 481 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 STXBP4Q6ZWJ1 553 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 PALB2Q86YC2 1186 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 ADHFE1Q8IWW8 467 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 FAM213AQ9BRX8 229 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 ADAM7Q9H2U9 754 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 PCIF1Q9H4Z3 704 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 ASB7Q9H672 318 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 DZANK1Q9NVP4 752 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 BDP1A6H8Y1 2624 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 GOLGA8IPA6NC78 632 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 C19orf67A6NJJ6 358 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 GOLGA8JA6NMD2 632 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 ADAM12O43184 909 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 TGFB1I1O43294 461 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 TGM5O43548 720 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 TRAPPC3O43617 180 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 ZNF202O95125 648 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 GLUD1P00367 558 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 PRR29P0C7W0 189 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 SPATA31D3P0C874 917 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 CBX2Q14781 532 aaPredicted RBP17.18■□□□□ 0.34
CLN3-201ENST00000333496 RARS2Q5T160 578 aaKnown RBP17.18■□□□□ 0.34
CLN3-201ENST00000333496 RSPO2Q6UXX9 243 aaPredicted RBP17.18■□□□□ 0.34
CLN3-201ENST00000333496 SPATA31D4Q6ZUB0 917 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 EFCAB13Q8IY85 973 aa17.18■□□□□ 0.34
CLN3-201ENST00000333496 MAN1C1Q9NR34 630 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms