RNA–Protein interactions for RNA: ENST00000331222.5

CLN8-201, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN8, Length 7,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-201ENST00000331222 DMAP1Q9NPF5 467 aaPredicted RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 PHLPP2Q6ZVD8 1323 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 ATMINO43313 823 aaPredicted RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 SCARF1Q14162 830 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 IZUMO3Q5VZ72 239 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 VSTM4Q8IW00 320 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 DIS3LQ8TF46 1054 aaKnown RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 TSC22D3Q99576 134 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 SPATS2LQ9NUQ6 558 aaKnown RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 MAP3K13O43283 966 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 AKAP10O43572 662 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 LRG1P02750 347 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 TBXAS1P24557 533 aaPredicted RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 TRPC1P48995 793 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 QRICH1Q2TAL8 776 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 ANGEL2Q5VTE6 544 aaKnown RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 PODNQ7Z5L7 613 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 TMEM60Q9H2L4 133 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 UTYO14607 1347 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 ANGPT2O15123 496 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 MMS22LQ6ZRQ5 1243 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 DHX40Q8IX18 779 aaKnown RBP11.11□□□□□ -0.63
CLN8-201ENST00000331222 SHCBP1Q8NEM2 672 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 PTPRN2Q92932 1015 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 ZNF556Q9HAH1 456 aa11.11□□□□□ -0.63
CLN8-201ENST00000331222 PARNO95453 639 aaKnown RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 STAT5BP51692 787 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 DEFB128Q7Z7B8 93 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 TASP1Q9H6P5 420 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 ARHGEF38Q9NXL2 777 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 MRPS15P82914 257 aaKnown RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 PPP1R2P3Q6NXS1 205 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 PPP4R3CPQ6ZMV5 832 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 HORMAD1Q86X24 394 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 TBC1D19Q8N5T2 526 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 NFKBIZQ9BYH8 718 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 SCUBE2Q9NQ36 999 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 RAB6BQ9NRW1 208 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 PCMTD2Q9NV79 361 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 CEP72Q9P209 647 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 P4HBP07237 508 aaKnown RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 BRAFP15056 766 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 CHRM3P20309 590 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 SP100P23497 879 aaPredicted RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 TEX9Q8N6V9 391 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 GPBP1L1Q9HC44 474 aaPredicted RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 MCM8Q9UJA3 840 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 PCDHB8Q9UN66 801 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 GSNP06396 782 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 THPOP40225 353 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 KHDRBS2Q5VWX1 349 aaKnown RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 CCDC81Q6ZN84 652 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 RD3Q7Z3Z2 195 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 ADCK1Q86TW2 530 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 PRG3Q9Y2Y8 225 aaPredicted RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 TCP11X1B4DZS4 312 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 MFAP3LO75121 409 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 MLNP12872 115 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 NCAM1P13591 858 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 ITGA4P13612 1032 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 KRT4P19013 534 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 TFDP2Q14188 446 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 ITPRIPL1Q6GPH6 555 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 EFCAB12Q6NXP0 572 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 FGD2Q7Z6J4 655 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 SH3TC2Q8TF17 1288 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 PPP2R3CQ969Q6 453 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 SNF8Q96H20 258 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 OSBPL9Q96SU4 736 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.1□□□□□ -0.635e-8■■■■□ 21.4
CLN8-201ENST00000331222 ATP11BQ9Y2G3 1177 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 CYP27B1O15528 508 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 ALDH1A2O94788 518 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 NPTXRO95502 500 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 DDX39BQ13838 428 aaKnown RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 PFKFB3Q16875 520 aaPredicted RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 PDXDC1Q6P996 788 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 LDHDQ86WU2 507 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 MYCBPQ99417 103 aaPredicted RBP11.1□□□□□ -0.63
CLN8-201ENST00000331222 TBC1D22BQ9NU19 505 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 ZFATQ9P243 1243 aa11.1□□□□□ -0.63
CLN8-201ENST00000331222 COL15A1P39059 1388 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 KRT7P08729 469 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 HPCAP84074 193 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 RESTQ13127 1097 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 USP10Q14694 798 aaKnown RBP11.09□□□□□ -0.63
CLN8-201ENST00000331222 KLHL38Q2WGJ6 581 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 ZNF555Q8NEP9 628 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 ASCC2Q9H1I8 757 aaPredicted RBP11.09□□□□□ -0.63
CLN8-201ENST00000331222 SSH2Q76I76 1423 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 KDM1AO60341 852 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 SCP2P22307 547 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 ARFIP2P53365 341 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 TRIM32Q13049 653 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 PLCL1Q15111 1095 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 PLEKHA8Q96JA3 519 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 TMEM117Q9H0C3 514 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 FBXO40Q9UH90 709 aa11.09□□□□□ -0.63
CLN8-201ENST00000331222 NAGPAQ9UK23 515 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms