RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 OFD1O75665 1012 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 HLA-DRAP01903 254 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 THP07101 528 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 SKIP12755 728 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 PBX3P40426 434 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 MYL6P60660 151 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 RNASELQ05823 741 aaKnown RBP16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 TRPC3Q13507 836 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 NCOA4Q13772 614 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 ZACNQ401N2 412 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 GBP6Q6ZN66 633 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 RRAGAQ7L523 313 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 FBXL13Q8NEE6 735 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 GIT1Q9Y2X7 761 aa16.62■□□□□ 0.25
PDLIM5-202ENST00000318007 CHD7Q9P2D1 2997 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 TBKBP1A7MCY6 615 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 F8W810 466 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 B4GALT3O60512 393 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 FGBP02675 491 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 PON1P27169 355 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 KCNJ6P48051 423 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 CLDN10P78369 228 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 SURF1Q15526 300 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 TRIM65Q6PJ69 517 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 SCARA5Q6ZMJ2 495 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 ZNF280BQ86YH2 543 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 VSTM4Q8IW00 320 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 MRFAP1L1Q96HT8 127 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 INTS2Q9H0H0 1204 aaKnown RBP16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 PLEKHA5Q9HAU0 1116 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 NLRC4Q9NPP4 1024 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 RAB20Q9NX57 234 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 SIX4Q9UIU6 781 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 AGAP1Q9UPQ3 857 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 RALGAPA2Q2PPJ7 1873 aa16.61■□□□□ 0.25
PDLIM5-202ENST00000318007 STX10O60499 249 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 EOMESO95936 686 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 PNMA6AP0CW24 399 aaPredicted RBP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 CLCNKBP51801 687 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 FAM189BP81408 668 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 CETN1Q12798 172 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 HSP90AA2PQ14568 343 aaPredicted RBP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 SPECC1LQ69YQ0 1117 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 NXF1Q9UBU9 619 aaKnown RBP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 AJAP1Q9UKB5 411 aaPredicted RBP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 SIK3Q9Y2K2 1263 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 R3HCC1Q9Y3T6 440 aaKnown RBP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 C2CD2Q9Y426 696 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 ABHD14A-ACY1A0A1B0GW23 586 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 ZC3H11AO75152 810 aaKnown RBP eCLIP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 RAPGEF1Q13905 1077 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 EPC2Q52LR7 807 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 TMEM240Q5SV17 173 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 C15orf39Q6ZRI6 1047 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 ARHGEF19Q8IW93 802 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 PPM1KQ8N3J5 372 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 BEST2Q8NFU1 509 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 CACTINQ8WUQ7 758 aaKnown RBP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 KAT5Q92993 513 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 PPP1R10Q96QC0 940 aaKnown RBP16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 ARID3AQ99856 593 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 DNAJB4Q9UDY4 337 aa16.6■□□□□ 0.25
PDLIM5-202ENST00000318007 TTC3P53804 2025 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 N4BP1O75113 896 aaKnown RBP16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 DDHD2O94830 711 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 AMHP03971 560 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 PBX1P40424 430 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 MAGEA10P43363 369 aaPredicted RBP16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 CDR1P51861 262 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 POLR2FP61218 127 aaKnown RBP16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 ARID5BQ14865 1188 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 ARHGAP44Q17R89 818 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 NOMO2Q5JPE7 1267 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 C9orf50Q5SZB4 431 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 PHLDB3Q6NSJ2 640 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 CD302Q8IX05 232 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 TATDN2Q93075 761 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 TBC1D13Q9NVG8 400 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 UBQLN1Q9UMX0 589 aaKnown RBP16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 FHOD1Q9Y613 1164 aa16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 TDRD15B5MCY1 1934 aaKnown RBP16.59■□□□□ 0.25
PDLIM5-202ENST00000318007 FAM170AA1A519 330 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 RNF225M0QZC1 329 aaPredicted RBP16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 PFKMP08237 780 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 KCNE1P15382 129 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 CASP14P31944 242 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 ADKP55263 362 aaKnown RBP16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 ZBTB6Q15916 424 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 ZNF699Q32M78 642 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 NPAS4Q8IUM7 802 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 NEK11Q8NG66 645 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 LMO3Q8TAP4 145 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 URGCPQ8TCY9 931 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 ERGIC2Q96RQ1 377 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 APOBEC3GQ9HC16 384 aaKnown RBP16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 PRG3Q9Y2Y8 225 aaPredicted RBP16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 SZT2Q5T011 3432 aa16.58■□□□□ 0.25
PDLIM5-202ENST00000318007 NT5C1B-RDH14C9J2C7 533 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 GYPCP04921 128 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 GTF2H1P32780 548 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms