RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SPATA5Q8NB90 893 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 POC1BQ8TC44 478 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ULK4Q96C45 1275 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 IFT43Q96FT9 208 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 TTC25Q96NG3 672 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 FAM96AQ9H5X1 160 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 JMJD4Q9H9V9 463 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 HMG20AQ9NP66 347 aa8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF215Q9UL58 517 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 NOVA2Q9UNW9 492 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-201ENST00000313860 MTX2O75431 263 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 PLEKHA8P1O95397 391 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 POLR1AO95602 1720 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 BPNT1O95861 308 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 MSH3P20585 1137 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 PTX3P26022 381 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 MAGEA3P43357 314 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 PLTPP55058 493 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 ACAP2Q15057 778 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TRIP13Q15645 432 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 SSX2Q16385 188 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 UGT3A2Q3SY77 523 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 RHPN2Q8IUC4 686 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 MAFIPQ8WZ33 124 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 IL17RAQ96F46 866 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 CSRNP1Q96S65 589 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 FOXP1Q9H334 677 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 SPG7Q9UQ90 795 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 KCNIP3Q9Y2W7 256 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TOP2BQ02880 1626 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 GRK5P34947 590 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 GUCA1AP43080 201 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 GPD2P43304 727 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 KHDRBS1Q07666 443 aaKnown RBP eCLIP8□□□□□ -1.13
LIMCH1-201ENST00000313860 INPP5AQ14642 412 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 AMZ1Q400G9 498 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TTC33Q6PID6 262 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 CCNYQ8ND76 341 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 KAT2AQ92830 837 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TBRG4Q969Z0 631 aaKnown RBP eCLIP8□□□□□ -1.13
LIMCH1-201ENST00000313860 RNF31Q96EP0 1072 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TBC1D7Q9P0N9 293 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 DUSP12Q9UNI6 340 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 RAD51BO15315 384 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 SGCEO43556 437 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 LDHAP00338 332 aaKnown RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 IFNA7P01567 189 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 ABCB1P08183 1280 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 GNAT1P11488 350 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 CYP11B1P15538 503 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 RPL13P26373 211 aaKnown RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 PRKAR1BP31321 381 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 PPARGP37231 505 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 GGCXP38435 758 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 THOP1P52888 689 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 GYS2P54840 703 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 PSMD4P55036 377 aaKnown RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 PRKCZQ05513 592 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 EAPPQ56P03 285 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 RABGAP1LQ5R372 815 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TMED8Q6PL24 325 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 CDC37L1Q7L3B6 337 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 CHST3Q7LGC8 479 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 ERICH1Q86X53 443 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 CMTR2Q8IYT2 770 aaKnown RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 CAMKK1Q8N5S9 505 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 ANKRD44Q8N8A2 993 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 BEST2Q8NFU1 509 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 SCFD1Q8WVM8 642 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 ZCCHC14Q8WYQ9 949 aaKnown RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 TMEM87BQ96K49 555 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 EHD4Q9H223 541 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 BOLA2Q9H3K6 86 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 CABP5Q9NP86 173 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TRPV5Q9NQA5 729 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 MAN1C1Q9NR34 630 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 OGDHLQ9ULD0 1010 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 ALDH1L1O75891 902 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 NLRP11P59045 1033 aaKnown RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 KLHL30Q0D2K2 578 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 NNTQ13423 1086 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 DGUOKQ16854 277 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TWF2Q6IBS0 349 aaKnown RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 LRRC69Q6ZNQ3 347 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 FAM83HQ6ZRV2 1179 aaPredicted RBP8□□□□□ -1.13
LIMCH1-201ENST00000313860 BAP1Q92560 729 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TOP1MTQ969P6 601 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 EXOC2Q96KP1 924 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 SSX3Q99909 188 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 MND1Q9BWT6 205 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TPCN1Q9ULQ1 816 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 SNX9Q9Y5X1 595 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 STK24Q9Y6E0 443 aa8□□□□□ -1.13
LIMCH1-201ENST00000313860 TGM6O95932 706 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 SLC4A2P04920 1241 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 NFICP08651 508 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 IFI30P13284 250 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 SARSP49591 514 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 HNMTP50135 292 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 DYNLT1P63172 113 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms