RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 NR2E1Q9Y466 385 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 DOCK8Q8NF50 2099 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 GAP43P17677 238 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 GUCY2FP51841 1108 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 CASP5P51878 434 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 DNM1Q05193 864 aaKnown RBP17.76■□□□□ 0.43
LSM1-201ENST00000311351 KCNA1Q09470 495 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 AXDND1Q5T1B0 1012 aaPredicted RBP17.76■□□□□ 0.43
LSM1-201ENST00000311351 ELMSAN1Q6PJG2 1045 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 RSPO2Q6UXX9 243 aaPredicted RBP17.76■□□□□ 0.43
LSM1-201ENST00000311351 C15orf39Q6ZRI6 1047 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 CCDC149Q6ZUS6 474 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 ZNF720Q7Z2F6 126 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 TDRD5Q8NAT2 981 aaKnown RBP17.76■□□□□ 0.43
LSM1-201ENST00000311351 KREMEN2Q8NCW0 462 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 DHX58Q96C10 678 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 ZNF707Q96C28 371 aaPredicted RBP17.76■□□□□ 0.43
LSM1-201ENST00000311351 KIF12Q96FN5 646 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 CHAMP1Q96JM3 812 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 PLEKHA5Q9HAU0 1116 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 MTRRQ9UBK8 725 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 SEL1LQ9UBV2 794 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 FBXW11Q9UKB1 542 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 NUB1Q9Y5A7 615 aa17.76■□□□□ 0.43
LSM1-201ENST00000311351 FRMD3A2A2Y4 597 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 LACTBL1A8MY62 500 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 TRAPPC3O43617 180 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 GCNT3O95395 438 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 PDIA4P13667 645 aaKnown RBP17.75■□□□□ 0.43
LSM1-201ENST00000311351 ABCD1P33897 745 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 PTPN21Q16825 1174 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 PDXDC1Q6P996 788 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 KCNG4Q8TDN1 519 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 SMG7Q92540 1137 aaKnown RBP17.75■□□□□ 0.43
LSM1-201ENST00000311351 HVCN1Q96D96 273 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 FAM212AQ96EL1 285 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 STRA6Q9BX79 667 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 PLEKHA4Q9H4M7 779 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 RPF1Q9H9Y2 349 aaKnown RBP17.75■□□□□ 0.43
LSM1-201ENST00000311351 PANK4Q9NVE7 773 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 DPP7Q9UHL4 492 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 CPSF3Q9UKF6 684 aaKnown RBP17.75■□□□□ 0.43
LSM1-201ENST00000311351 CDY1Q9Y6F8 540 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 TSC2P49815 1807 aa17.75■□□□□ 0.43
LSM1-201ENST00000311351 PRR33A8MZF0 331 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 ZMYND10O75800 440 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 RPL9P32969 192 aaKnown RBP17.74■□□□□ 0.43
LSM1-201ENST00000311351 MCM4P33991 863 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 OR1D2P34982 312 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 ME1P48163 572 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 ACOT2P49753 483 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 KYAT1Q16773 422 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 VARS2Q5ST30 1063 aaKnown RBP17.74■□□□□ 0.43
LSM1-201ENST00000311351 L1TD1Q5T7N2 865 aaKnown RBP17.74■□□□□ 0.43
LSM1-201ENST00000311351 ADALQ6DHV7 355 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 JADE1Q6IE81 842 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 HDAC7Q8WUI4 952 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 EDAQ92838 391 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 TNMDQ9H2S6 317 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 OLFML3Q9NRN5 406 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 UBQLN1Q9UMX0 589 aaKnown RBP17.74■□□□□ 0.43
LSM1-201ENST00000311351 PCDHA7Q9UN72 937 aa17.74■□□□□ 0.43
LSM1-201ENST00000311351 CLUHO75153 1309 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 TCHHQ07283 1943 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 PPEF2O14830 753 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 C1RP00736 705 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 ASGR2P07307 311 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 C8AP07357 584 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 NFICP08651 508 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 ADSSP30520 456 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 ZXDAP98168 799 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 ZBTB6Q15916 424 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 LIN9Q5TKA1 542 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 ANKS3Q6ZW76 656 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 GLIS3Q8NEA6 775 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 HPS3Q969F9 1004 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 SUSD3Q96L08 255 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 TRIM9Q9C026 710 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 SMOC2Q9H3U7 446 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 KBTBD4Q9NVX7 518 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 ZDHHC7Q9NXF8 308 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 AGO2Q9UKV8 859 aaKnown RBP17.73■□□□□ 0.43
LSM1-201ENST00000311351 ZDHHC9Q9Y397 364 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 BACE2Q9Y5Z0 518 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 STYXL1Q9Y6J8 313 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 ZNF318Q5VUA4 2279 aa17.73■□□□□ 0.43
LSM1-201ENST00000311351 SCN1AP35498 2009 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 ZDBF2Q9HCK1 2354 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 SYN3O14994 580 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 N4BP1O75113 896 aaKnown RBP17.72■□□□□ 0.43
LSM1-201ENST00000311351 PAPLNO95428 1278 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 ADRB2P07550 413 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 LRPAP1P30533 357 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 RAB33AQ14088 237 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 SLFN12LQ6IEE8 588 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 HFE2Q6ZVN8 426 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 ZDHHC14Q8IZN3 488 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 ZSWIM2Q8NEG5 633 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 SLC7A14Q8TBB6 771 aa17.72■□□□□ 0.43
LSM1-201ENST00000311351 POMGNT1Q8WZA1 660 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms