RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 DUSP12Q9UNI6 340 aa21.31■■□□□ 1
LIME1-201ENST00000309546 NARSO43776 548 aaKnown RBP21.3■■□□□ 1
LIME1-201ENST00000309546 TRAK2O60296 914 aa21.3■■□□□ 1
LIME1-201ENST00000309546 XYLBO75191 536 aa21.3■■□□□ 1
LIME1-201ENST00000309546 SYT1P21579 422 aa21.3■■□□□ 1
LIME1-201ENST00000309546 FSHRP23945 695 aa21.3■■□□□ 1
LIME1-201ENST00000309546 MCM4P33991 863 aa21.3■■□□□ 1
LIME1-201ENST00000309546 RESTQ13127 1097 aa21.3■■□□□ 1
LIME1-201ENST00000309546 AXDND1Q5T1B0 1012 aaPredicted RBP21.3■■□□□ 1
LIME1-201ENST00000309546 ST13P5Q8NFI4 369 aaPredicted RBP21.3■■□□□ 1
LIME1-201ENST00000309546 EPSTI1Q96J88 318 aa21.3■■□□□ 1
LIME1-201ENST00000309546 BACH2Q9BYV9 841 aa21.3■■□□□ 1
LIME1-201ENST00000309546 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.3■■□□□ 1
LIME1-201ENST00000309546 TUBGCP4Q9UGJ1 667 aa21.3■■□□□ 1
LIME1-201ENST00000309546 TBX20Q9UMR3 447 aa21.3■■□□□ 1
LIME1-201ENST00000309546 BACE2Q9Y5Z0 518 aa21.3■■□□□ 1
LIME1-201ENST00000309546 CLTAP09496 248 aa21.29■■□□□ 1
LIME1-201ENST00000309546 RPL9P32969 192 aaKnown RBP21.29■■□□□ 1
LIME1-201ENST00000309546 TNFSF9P41273 254 aa21.29■■□□□ 1
LIME1-201ENST00000309546 ZNF131P52739 623 aa21.29■■□□□ 1
LIME1-201ENST00000309546 ARPP19P56211 112 aa21.29■■□□□ 1
LIME1-201ENST00000309546 PTPAQ15257 358 aa21.29■■□□□ 1
LIME1-201ENST00000309546 VARS2Q5ST30 1063 aaKnown RBP21.29■■□□□ 1
LIME1-201ENST00000309546 USP49Q70CQ1 688 aa21.29■■□□□ 1
LIME1-201ENST00000309546 FLCNQ8NFG4 579 aa21.29■■□□□ 1
LIME1-201ENST00000309546 CCSER1Q9C0I3 900 aa21.29■■□□□ 1
LIME1-201ENST00000309546 CFHP08603 1231 aa21.28■■□□□ 1
LIME1-201ENST00000309546 LAMP2P13473 410 aa21.28■■□□□ 1
LIME1-201ENST00000309546 HOXA9P31269 272 aa21.28■■□□□ 1
LIME1-201ENST00000309546 PPP2R3AQ06190 1150 aa21.28■■□□□ 1
LIME1-201ENST00000309546 TCF15Q12870 199 aa21.28■■□□□ 1
LIME1-201ENST00000309546 TMEM130Q8N3G9 435 aa21.28■■□□□ 1
LIME1-201ENST00000309546 KIF12Q96FN5 646 aa21.28■■□□□ 1
LIME1-201ENST00000309546 FBXO2Q9UK22 296 aaPredicted RBP21.28■■□□□ 1
LIME1-201ENST00000309546 MYH15Q9Y2K3 1946 aa21.27■■□□□ 1
LIME1-201ENST00000309546 SYN3O14994 580 aa21.27■■□□□ 1
LIME1-201ENST00000309546 NMT1P30419 496 aaKnown RBP21.27■■□□□ 1
LIME1-201ENST00000309546 TXLNAP40222 546 aa21.27■■□□□ 1
LIME1-201ENST00000309546 MRE11P49959 708 aa21.27■■□□□ 1
LIME1-201ENST00000309546 ROR1Q01973 937 aa21.27■■□□□ 1
LIME1-201ENST00000309546 ZBTB41Q5SVQ8 909 aa21.27■■□□□ 1
LIME1-201ENST00000309546 TMEM105Q8N8V8 129 aa21.27■■□□□ 1
LIME1-201ENST00000309546 KRI1Q8N9T8 703 aaKnown RBP21.27■■□□□ 1
LIME1-201ENST00000309546 CLIC6Q96NY7 704 aa21.27■■□□□ 1
LIME1-201ENST00000309546 HCFC1R1Q9NWW0 138 aa21.27■■□□□ 1
LIME1-201ENST00000309546 CCDC39Q9UFE4 941 aa21.27■■□□□ 1
LIME1-201ENST00000309546 H7C4K7 107 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 K7ELQ4 463 aaPredicted RBP21.26■□□□□ 0.99
LIME1-201ENST00000309546 PIGRP01833 764 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 DDIT3P35638 169 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 KYAT1Q16773 422 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 UVSSAQ2YD98 709 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 ASTLQ6HA08 431 aaPredicted RBP21.26■□□□□ 0.99
LIME1-201ENST00000309546 DYMQ7RTS9 669 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 SIX5Q8N196 739 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 SLC44A3Q8N4M1 653 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 FAM212AQ96EL1 285 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 INTS4Q96HW7 963 aaKnown RBP21.26■□□□□ 0.99
LIME1-201ENST00000309546 SUSD3Q96L08 255 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 MSTO1Q9BUK6 570 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 RPF1Q9H9Y2 349 aaKnown RBP21.26■□□□□ 0.99
LIME1-201ENST00000309546 PLEKHA5Q9HAU0 1116 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 MTMR6Q9Y217 621 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 NUMBLQ9Y6R0 609 aa21.26■□□□□ 0.99
LIME1-201ENST00000309546 TTC26A0AVF1 554 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 WDR27A2RRH5 827 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 LACTBL1A8MY62 500 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 PRRG1O14668 218 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 OGTO15294 1046 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 SCP2P22307 547 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 ELF1P32519 619 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 HTR4Q13639 388 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 CTXN3Q4LDR2 81 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 ZC2HC1CQ53FD0 456 aaPredicted RBP21.25■□□□□ 0.99
LIME1-201ENST00000309546 CWF19L1Q69YN2 538 aaKnown RBP21.25■□□□□ 0.99
LIME1-201ENST00000309546 SLC8B1Q6J4K2 584 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 ZNF280DQ6N043 979 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 KCNN1Q92952 543 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 NXPE3Q969Y0 559 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 FIZ1Q96SL8 496 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 PHOX2BQ99453 314 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 NOTCH4Q99466 2003 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 FAM86C1Q9NVL1 165 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 STK17AQ9UEE5 414 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 FBXL5Q9UKA1 691 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 CDH7Q9ULB5 785 aa21.25■□□□□ 0.99
LIME1-201ENST00000309546 UBQLN1Q9UMX0 589 aaKnown RBP21.25■□□□□ 0.99
LIME1-201ENST00000309546 SRPRBQ9Y5M8 271 aaKnown RBP21.25■□□□□ 0.99
LIME1-201ENST00000309546 ANK1P16157 1881 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 LRG1P02750 347 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 RFX1P22670 979 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 GUCY2FP51841 1108 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 ENOX2Q16206 610 aaKnown RBP21.24■□□□□ 0.99
LIME1-201ENST00000309546 PABPC1LQ4VXU2 614 aaKnown RBP21.24■□□□□ 0.99
LIME1-201ENST00000309546 RRAGBQ5VZM2 374 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 SLC39A4Q6P5W5 647 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 SFR1Q86XK3 245 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 APPL2Q8NEU8 664 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 ZNF461Q8TAF7 563 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 ITFG1Q8TB96 612 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms