RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 HSPA9P38646 679 aaKnown RBP16.81■□□□□ 0.28
USP42-201ENST00000306177 ACTR2P61160 394 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 ZNF235Q14590 738 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 ATF7IP2Q5U623 682 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 GPRASP2Q96D09 838 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 MCEEQ96PE7 176 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 MED15Q96RN5 788 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 ERGIC2Q96RQ1 377 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 MYCBPQ99417 103 aaPredicted RBP16.81■□□□□ 0.28
USP42-201ENST00000306177 VIPAS39Q9H9C1 493 aa16.81■□□□□ 0.28
USP42-201ENST00000306177 MRPL40Q9NQ50 206 aaKnown RBP16.81■□□□□ 0.28
USP42-201ENST00000306177 MORF4L2Q15014 288 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.8■□□□□ 0.28
USP42-201ENST00000306177 KLHDC7AQ5VTJ3 777 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 TRIM10Q9UDY6 481 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 L3MBTL1Q9Y468 752 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 BYSLQ13895 437 aaKnown RBP16.8■□□□□ 0.28
USP42-201ENST00000306177 PTPAQ15257 358 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 IER5Q5VY09 327 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 ULK4Q96C45 1275 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 MRPL46Q9H2W6 279 aaKnown RBP16.8■□□□□ 0.28
USP42-201ENST00000306177 FBXO28Q9NVF7 368 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 PRMT7Q9NVM4 692 aaPredicted RBP16.8■□□□□ 0.28
USP42-201ENST00000306177 ZFATQ9P243 1243 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 PIK3R2O00459 728 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 MSH4O15457 936 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 DIAPH2O60879 1101 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 CD4P01730 458 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 GRIK1P39086 918 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 TRMT10CQ7L0Y3 403 aaKnown RBP16.8■□□□□ 0.28
USP42-201ENST00000306177 ADGRA1Q86SQ6 560 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 PGBD4Q96DM1 585 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 SUDS3Q9H7L9 328 aaPredicted RBP16.8■□□□□ 0.28
USP42-201ENST00000306177 SLC37A4O43826 429 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 AGTP01019 485 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 EEF1B2P24534 225 aaKnown RBP16.8■□□□□ 0.28
USP42-201ENST00000306177 RGS7P49802 495 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 RPS6P62753 249 aaKnown RBP16.8■□□□□ 0.28
USP42-201ENST00000306177 DEUP1Q05D60 604 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 P3H1Q32P28 736 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 ZNF677Q86XU0 584 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 TJP2Q9UDY2 1190 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 SLC13A4Q9UKG4 626 aa16.8■□□□□ 0.28
USP42-201ENST00000306177 AP3B1O00203 1094 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 PPFIA2O75334 1257 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 PYGBP11216 843 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 ASIC4Q96FT7 647 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 TRIM51Q9BSJ1 452 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 SARS2Q9NP81 518 aaKnown RBP16.79■□□□□ 0.28
USP42-201ENST00000306177 ERAP1Q9NZ08 941 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 KCNH4Q9UQ05 1017 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 MYO1CO00159 1063 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 HBP1O60381 514 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 ICAM1P05362 532 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 RARBP10826 455 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 ANGPTL8Q6UXH0 198 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 ANKMY2Q8IV38 441 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 PIP4K2CQ8TBX8 421 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 ACER1Q8TDN7 264 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 SCFD2Q8WU76 684 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 DNAJC8O75937 253 aaPredicted RBP16.79■□□□□ 0.28
USP42-201ENST00000306177 KLK7P49862 253 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 SH3TC2Q8TF17 1288 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 TAAR1Q96RJ0 339 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 MMTAG2Q9BU76 263 aaKnown RBP16.79■□□□□ 0.28
USP42-201ENST00000306177 C17orf75Q9HAS0 396 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 IRAK4Q9NWZ3 460 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 ATP9BO43861 1147 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 SEC23AQ15436 765 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 IMPG1Q17R60 797 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 LRIG3Q6UXM1 1119 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 CNPY4Q8N129 248 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 SNX19Q92543 992 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 NCLNQ969V3 563 aa16.79■□□□□ 0.28
USP42-201ENST00000306177 COL5A2P05997 1499 aaPredicted RBP16.78■□□□□ 0.28
USP42-201ENST00000306177 ZBBXA8MT70 800 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 NEMP1O14524 444 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 CAP2P40123 477 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 RAD51Q06609 339 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 MOXD1Q6UVY6 613 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 NT5C1AQ9BXI3 368 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 TSPYL2Q9H2G4 693 aaPredicted RBP16.78■□□□□ 0.28
USP42-201ENST00000306177 C6orf222P0C671 652 aaPredicted RBP16.78■□□□□ 0.28
USP42-201ENST00000306177 C1orf146Q5VVC0 180 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 ARHGEF26Q96DR7 871 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 TMEM247A6NEH6 219 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 ANKRD65E5RJM6 399 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 EFCAB12Q6NXP0 572 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 ASAP3Q8TDY4 903 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 RBM15Q96T37 977 aaKnown RBP eCLIP16.78■□□□□ 0.281e-6■■■■□ 21.5
USP42-201ENST00000306177 NIF3L1Q9GZT8 377 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 UNC45AQ9H3U1 944 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 TRABDQ9H4I3 376 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 SMYD3Q9H7B4 428 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 BCL9O00512 1426 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 CYP11B2P19099 503 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 INPP1P49441 399 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 NPEPPSP55786 919 aa16.78■□□□□ 0.28
USP42-201ENST00000306177 FASTKD1Q53R41 847 aaKnown RBP16.78■□□□□ 0.28
USP42-201ENST00000306177 MTHFD1LQ6UB35 978 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms