RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TARSP26639 723 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 GRM5P41594 1212 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 LMNB2Q03252 620 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 GLRA4Q5JXX5 417 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 TPGS2Q68CL5 300 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 MAMSTRQ6ZN01 415 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 TCEAL8Q8IYN2 117 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 ELMOD1Q8N336 334 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 CXCL16Q9H2A7 254 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 ZFP14Q9HCL3 533 aa16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 PRMT8Q9NR22 394 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-201ENST00000301897 CITO14578 2027 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 EIF5BO60841 1220 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 LILRB5O75023 590 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 ATF2P15336 505 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 ROR1Q01973 937 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 SLC5A9Q2M3M2 681 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 XKR4Q5GH76 650 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 NT5DC1Q5TFE4 455 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 LEMD2Q8NC56 503 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 IRF7Q92985 503 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 BRD9Q9H8M2 597 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 TRPV5Q9NQA5 729 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 HEBP1Q9NRV9 189 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 USP20Q9Y2K6 914 aa16.21■□□□□ 0.19
CCDC88B-201ENST00000301897 EDN1P05305 212 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 CEBPBP17676 345 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 RPL9P32969 192 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 CCT6AP40227 531 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 BRCC3P46736 316 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 CYP4A22Q5TCH4 519 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 TANGO2Q6ICL3 276 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 IQCEQ6IPM2 695 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 CD300LGQ6UXG3 332 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 ALKAL1Q6UXT8 129 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 PDZD4Q76G19 769 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 CORO1BQ9BR76 489 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 KIFC3Q9BVG8 833 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 TRMT61BQ9BVS5 477 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 MRPL4Q9BYD3 311 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 BHMT2Q9H2M3 363 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 GMEB2Q9UKD1 530 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 RAB23Q9ULC3 237 aa16.2■□□□□ 0.18
CCDC88B-201ENST00000301897 WDR27A2RRH5 827 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 PODXLO00592 558 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 JAK2O60674 1132 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 KCNE1P15382 129 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 TRAPPC10P48553 1259 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 FXR2P51116 673 aaKnown RBP eCLIP16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 FOSBP53539 338 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 DMP1Q13316 513 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 ZNF568Q3ZCX4 644 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 PRSS36Q5K4E3 855 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 C3orf58Q8NDZ4 430 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 APPL2Q8NEU8 664 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 ACO2Q99798 780 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 RAB34Q9BZG1 259 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 PLA2G2FQ9BZM2 168 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 CDT1Q9H211 546 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 CHRDQ9H2X0 955 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 FOXP1Q9H334 677 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 TMEM134Q9H6X4 195 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 CYP4F11Q9HBI6 524 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 GOLGA2P5Q9HBQ8 144 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 CDV3Q9UKY7 258 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 RBM19Q9Y4C8 960 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 NUB1Q9Y5A7 615 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 INSL5Q9Y5Q6 135 aa16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-201ENST00000301897 COL4A3Q01955 1670 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 CCDC169A6NNP5 214 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 I3L4J1 428 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 LARGE1O95461 756 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 MCF2P10911 925 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 PSMC3P17980 439 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 MTAPQ13126 283 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 MRPL58Q14197 206 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 PDIA5Q14554 519 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 ZNF174Q15697 407 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 ZNF280DQ6N043 979 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 C1orf228Q6PIY5 440 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 DEPDC1BQ8WUY9 529 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 SMARCD2Q92925 531 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 E2F7Q96AV8 911 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 C8orf76Q96K31 380 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 DRC1Q96MC2 740 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 ZNF512Q96ME7 567 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 ASB16Q96NS5 453 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 ACAP3Q96P50 834 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 GPR88Q9GZN0 384 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 C17orf75Q9HAS0 396 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 CNTN3Q9P232 1028 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 LRWD1Q9UFC0 647 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 AFF4Q9UHB7 1163 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 KCNG1Q9UIX4 513 aa16.18■□□□□ 0.18
CCDC88B-201ENST00000301897 FCARP24071 287 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 IGFBP6P24592 240 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 NPTX2P47972 431 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 CCR3P51677 355 aa16.17■□□□□ 0.18
CCDC88B-201ENST00000301897 MLLT6P55198 1093 aaPredicted RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms