RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 VARS2Q5ST30 1063 aaKnown RBP13.96□□□□□ -0.17
CD44-203ENST00000278386 CD300LGQ6UXG3 332 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 NPAS3Q8IXF0 933 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 BICD1Q96G01 975 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 ZMAT2Q96NC0 199 aaKnown RBP13.96□□□□□ -0.17
CD44-203ENST00000278386 PTPRHQ9HD43 1115 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 CNTN3Q9P232 1028 aa13.96□□□□□ -0.17
CD44-203ENST00000278386 DNMT3BQ9UBC3 853 aaKnown RBP13.96□□□□□ -0.17
CD44-203ENST00000278386 MRPS23Q9Y3D9 190 aaKnown RBP13.96□□□□□ -0.17
CD44-203ENST00000278386 FAM186AA6NE01 2351 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 TSC2P49815 1807 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 H7C4K7 107 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 CENPBP07199 599 aaPredicted RBP13.95□□□□□ -0.18
CD44-203ENST00000278386 PLS3P13797 630 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 PROZP22891 400 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 CACNB1Q02641 598 aaPredicted RBP13.95□□□□□ -0.18
CD44-203ENST00000278386 SEZ6Q53EL9 994 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 XKR4Q5GH76 650 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 PHLDB3Q6NSJ2 640 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 ALKAL1Q6UXT8 129 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 PJA1Q8NG27 643 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 C18orf25Q96B23 403 aaPredicted RBP13.95□□□□□ -0.18
CD44-203ENST00000278386 SHDQ96IW2 340 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 ZBTB45Q96K62 511 aaPredicted RBP13.95□□□□□ -0.18
CD44-203ENST00000278386 RPP25Q9BUL9 199 aaKnown RBP13.95□□□□□ -0.18
CD44-203ENST00000278386 FOXQ1Q9C009 403 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 SIT1Q9Y3P8 196 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 TICRRQ7Z2Z1 1910 aa13.95□□□□□ -0.18
CD44-203ENST00000278386 WDR27A2RRH5 827 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 ABLIM1O14639 778 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 SYN3O14994 580 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 TOM1L1O75674 476 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 RHOP08100 348 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 PLA2G4BP0C869 781 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 KCNE1P15382 129 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 GPC5P78333 572 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 SNW1Q13573 536 aaKnown RBP13.94□□□□□ -0.18
CD44-203ENST00000278386 MLF2Q15773 248 aaPredicted RBP13.94□□□□□ -0.18
CD44-203ENST00000278386 CTXN3Q4LDR2 81 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 HYIQ5T013 277 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 ZNF280DQ6N043 979 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 RTL10Q7L3V2 364 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 KCNG4Q8TDN1 519 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 SPIRE2Q8WWL2 714 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 TMX3Q96JJ7 454 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 PNMA5Q96PV4 448 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 UPF2Q9HAU5 1272 aaKnown RBP13.94□□□□□ -0.18
CD44-203ENST00000278386 CYP4F11Q9HBI6 524 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 TUBGCP4Q9UGJ1 667 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 KCNH3Q9ULD8 1083 aa13.94□□□□□ -0.18
CD44-203ENST00000278386 NPHP3-ACAD11A0A0J9YXS1 232 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 CLDN3O15551 220 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 CXCL8P10145 99 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 MAPTP10636 758 aaKnown RBP13.93□□□□□ -0.18
CD44-203ENST00000278386 CPB1P15086 417 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 CEBPBP17676 345 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 RPL9P32969 192 aaKnown RBP13.93□□□□□ -0.18
CD44-203ENST00000278386 PFKPQ01813 784 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 UBXN2BQ14CS0 331 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 SLC5A9Q2M3M2 681 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 SLC8B1Q6J4K2 584 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 ADSSL1Q8N142 457 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 ELMOD1Q8N336 334 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 SYT2Q8N9I0 419 aaPredicted RBP13.93□□□□□ -0.18
CD44-203ENST00000278386 TMEM161BQ8NDZ6 487 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 RASSF8Q8NHQ8 419 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 ZNF461Q8TAF7 563 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 MCRS1Q96EZ8 462 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 CORO1BQ9BR76 489 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 KCND2Q9NZV8 630 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 LARSQ9P2J5 1176 aaKnown RBP13.93□□□□□ -0.18
CD44-203ENST00000278386 KCNG1Q9UIX4 513 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 FBXL5Q9UKA1 691 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 INSL5Q9Y5Q6 135 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 R4GN57 208 aa13.93□□□□□ -0.18
CD44-203ENST00000278386 PTPRZ1P23471 2315 aaPredicted RBP13.93□□□□□ -0.18
CD44-203ENST00000278386 H0YCG3 227 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 K7ENM7 598 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 LRRN2O75325 713 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 PTPN2P17706 415 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 LIG4P49917 911 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 SLC12A3P55017 1021 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 STARD6P59095 220 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 PPP2R3AQ06190 1150 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 SPAG1Q07617 926 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 MCL1Q07820 350 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 DHX8Q14562 1220 aaKnown RBP13.92□□□□□ -0.18
CD44-203ENST00000278386 TMEM119Q4V9L6 283 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 ARL6IP4Q66PJ3 421 aaKnown RBP13.92□□□□□ -0.18
CD44-203ENST00000278386 ZC3H14Q6PJT7 736 aaKnown RBP13.92□□□□□ -0.18
CD44-203ENST00000278386 ZPBP2Q6X784 338 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 PDZD4Q76G19 769 aaPredicted RBP13.92□□□□□ -0.18
CD44-203ENST00000278386 GPBP1Q86WP2 473 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 KCTD17Q8N5Z5 321 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 APPL2Q8NEU8 664 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 KIF12Q96FN5 646 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 CALML4Q96GE6 196 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 SUSD3Q96L08 255 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 TBC1D32Q96NH3 1257 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 GDE1Q9NZC3 331 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms