RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 RTEL1Q9NZ71 1219 aa5.18□□□□□ -1.58
CD44-202ENST00000278385 GPRC5BQ9NZH0 403 aa5.18□□□□□ -1.58
CD44-202ENST00000278385 CDC23Q9UJX2 597 aa5.18□□□□□ -1.58
CD44-202ENST00000278385 RGPD8O14715 1765 aaPredicted RBP5.18□□□□□ -1.58
CD44-202ENST00000278385 COL14A1Q05707 1796 aaKnown RBP5.18□□□□□ -1.58
CD44-202ENST00000278385 TRPM1Q7Z4N2 1603 aa5.18□□□□□ -1.58
CD44-202ENST00000278385 WDR17Q8IZU2 1322 aa5.18□□□□□ -1.58
CD44-202ENST00000278385 ALS2Q96Q42 1657 aa5.18□□□□□ -1.58
CD44-202ENST00000278385 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 CRB1P82279 1406 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 TSPY2A6NKD2 308 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 DBX1A6NMT0 343 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 EIF3FO00303 357 aaPredicted RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 CPLX1O14810 134 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 GSTA4O15217 222 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 HTATSF1O43719 755 aaKnown RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 TSPY3P0CV98 308 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 TSPY8P0CW00 308 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 MTHFD1P11586 935 aaKnown RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 ATF7P17544 494 aaPredicted RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 ABCB4P21439 1286 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 GRK2P25098 689 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 BCL6P41182 706 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 STAT1P42224 750 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 MAN2A2P49641 1150 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 CLNS1AP54105 237 aaKnown RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 ATXN1P54253 815 aaKnown RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 PRR5P85299 388 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 TSPY1Q01534 308 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 DSG1Q02413 1049 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 ICA1Q05084 483 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 BLMHQ13867 455 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 SF1Q15637 639 aaKnown RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 PTPN14Q15678 1187 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 ZNF124Q15973 351 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 KCNA10Q16322 511 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 DDB1Q16531 1140 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 KIAA0753Q2KHM9 967 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 KIZQ2M2Z5 673 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 PLEKHN1Q494U1 663 aaPredicted RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 SLC35F1Q5T1Q4 408 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 ANKRD45Q5TZF3 282 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 CCDC30Q5VVM6 783 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 DSTYKQ6XUX3 929 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 OVCH2Q7RTZ1 564 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 MILR1Q7Z6M3 343 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 ZC3H18Q86VM9 953 aaKnown RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 NME9Q86XW9 330 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 NRSN1Q8IZ57 195 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 KRT78Q8N1N4 520 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 NXPE1Q8N323 547 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 MZB1Q8WU39 189 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 SEC14L1Q92503 715 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 COG3Q96JB2 828 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 SIGLEC10Q96LC7 697 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 MAGEB10Q96LZ2 347 aaPredicted RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 ASB2Q96Q27 587 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 TREX2Q9BQ50 279 aaPredicted RBP5.17□□□□□ -1.58
CD44-202ENST00000278385 PHF20Q9BVI0 1012 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 TMEM60Q9H2L4 133 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 EPB41L1Q9H4G0 881 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 EMC7Q9NPA0 242 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 UBN1Q9NPG3 1134 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 ITM2CQ9NQX7 267 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 NSMCE4AQ9NXX6 385 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 ITSN1Q15811 1721 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 NWD2Q9ULI1 1742 aa5.17□□□□□ -1.58
CD44-202ENST00000278385 USP47Q96K76 1375 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 EDC4Q6P2E9 1401 aaKnown RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 CAMTA1Q9Y6Y1 1673 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 COL5A2P05997 1499 aaPredicted RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 MYOCOSA0A1B0GUC4 107 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 FSD2A1L4K1 749 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 KLHL33A6NCF5 533 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 NPIPB6E9PJ23 425 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 N4BP3O15049 544 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 XPOTO43592 962 aaKnown RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 NUAK1O60285 661 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 DLX3O60479 287 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 DKC1O60832 514 aaKnown RBP eCLIP5.16□□□□□ -1.58
CD44-202ENST00000278385 C1QTNF9P0C862 333 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 GLI4P10075 376 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 GRIA2P42262 883 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 LSSP48449 732 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 PRIM2P49643 509 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 NAP1L1P55209 391 aaKnown RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 ZNF200P98182 395 aaPredicted RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 SPIRE1Q08AE8 756 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 MEA1Q16626 185 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 INF2Q27J81 1249 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 MFSD4BQ5TF39 518 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 NUGGCQ68CJ6 796 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 DARS2Q6PI48 645 aaKnown RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 ENOSF1Q7L5Y1 443 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 RASGRP2Q7LDG7 609 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 MAMDC2Q7Z304 686 aaPredicted RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 MTDHQ86UE4 582 aaKnown RBP5.16□□□□□ -1.58
CD44-202ENST00000278385 RIOX2Q8IUF8 465 aa5.16□□□□□ -1.58
CD44-202ENST00000278385 TEX11Q8IYF3 940 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms