RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ITM2BQ9Y287 266 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 SERPIND1P05546 499 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 NUMBP49757 651 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 TAP1Q03518 808 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 SEZ6Q53EL9 994 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 DDX42Q86XP3 938 aaKnown RBP eCLIP12.07□□□□□ -0.48
USP53-201ENST00000274030 ZNF34Q8IZ26 560 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 ACSF2Q96CM8 615 aaPredicted RBP12.07□□□□□ -0.48
USP53-201ENST00000274030 TSC22D3Q99576 134 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 TRIM54Q9BYV2 358 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 FAM96AQ9H5X1 160 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 RUBCNLQ9H714 662 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 JMJD4Q9H9V9 463 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 RBM12Q9NTZ6 932 aaKnown RBP12.07□□□□□ -0.48
USP53-201ENST00000274030 HECW2Q9P2P5 1572 aa12.07□□□□□ -0.48
USP53-201ENST00000274030 UBE2Q2LH0YL09 131 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 PSMD14O00487 310 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 IRF1P10914 325 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 HSPA9P38646 679 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 LRRC36Q1X8D7 754 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 EFHBQ8N7U6 833 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 DTX3LQ8TDB6 740 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 CHMP2BQ9UQN3 213 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 CRB1P82279 1406 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 SLC16A3O15427 465 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 FDPSP14324 419 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 AP2B1P63010 937 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 ZC3H12BQ5HYM0 836 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 RABGAP1LQ5R372 815 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 DDX53Q86TM3 631 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 CELF4Q9BZC1 486 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 NPHS2Q9NP85 383 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 ZC3H7BQ9UGR2 993 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 SNX5Q9Y5X3 404 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 C3orf70A6NLC5 250 aaPredicted RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 R3HDM1Q15032 1099 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 SAMD7Q7Z3H4 446 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 RCOR2Q8IZ40 523 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 SMARCAD1Q9H4L7 1026 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 XPO7Q9UIA9 1087 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 A2ML1A8K2U0 1454 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 CHUKO15111 745 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 TLR2O60603 784 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 HLA-DRAP01903 254 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 SLC1A1P43005 524 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 NR1I3Q14994 352 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 SF3B3Q15393 1217 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 ZNF467Q7Z7K2 595 aaPredicted RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 NUP93Q8N1F7 819 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 SEPT5Q99719 369 aaPredicted RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 PLA2G12BQ9BX93 195 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 VCPKMTQ9H867 229 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 DYRK4Q9NR20 520 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 NDE1Q9NXR1 346 aa12.06□□□□□ -0.48
USP53-201ENST00000274030 MAP3K20Q9NYL2 800 aaKnown RBP12.06□□□□□ -0.48
USP53-201ENST00000274030 PHF20L1A8MW92 1017 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 SBK1Q52WX2 424 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 C16orf86Q6ZW13 317 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 CRAMP1Q96RY5 1269 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 NEU2Q9Y3R4 380 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 HLA-DPA1P20036 260 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 COMTP21964 271 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 STAT4Q14765 748 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 KIZQ2M2Z5 673 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 SPDYAQ5MJ70 313 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 SLC25A41Q8N5S1 370 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 ASPSCR1Q9BZE9 553 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 PCMTD2Q9NV79 361 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 NYAP2Q9P242 653 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 STX18Q9P2W9 335 aaKnown RBP12.05□□□□□ -0.48
USP53-201ENST00000274030 CHN1P15882 459 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 DEUP1Q05D60 604 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 SGSM1Q2NKQ1 1148 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 ACBD5Q5T8D3 534 aaPredicted RBP12.05□□□□□ -0.48
USP53-201ENST00000274030 CYP4A22Q5TCH4 519 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 IL31Q6EBC2 164 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 PPHLN1Q8NEY8 458 aaKnown RBP12.05□□□□□ -0.48
USP53-201ENST00000274030 TARS2Q9BW92 718 aaKnown RBP12.05□□□□□ -0.48
USP53-201ENST00000274030 TEKT2Q9UIF3 430 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 LRRC7Q96NW7 1537 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 KLRK1P26718 216 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 C6orf10Q5SRN2 563 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 IFNEQ86WN2 208 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 BHMTQ93088 406 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 NAF1Q96HR8 494 aaKnown RBP12.05□□□□□ -0.48
USP53-201ENST00000274030 ZNF512Q96ME7 567 aaPredicted RBP12.05□□□□□ -0.48
USP53-201ENST00000274030 OSBPL1AQ9BXW6 950 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 FBXO28Q9NVF7 368 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 PGM1P36871 562 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 EFCAB12Q6NXP0 572 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 KCNV1Q6PIU1 500 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 SPATA21Q7Z572 469 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 TC2NQ8N9U0 490 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 LPAR1Q92633 364 aa12.05□□□□□ -0.48
USP53-201ENST00000274030 PHF2O75151 1096 aa12.04□□□□□ -0.48
USP53-201ENST00000274030 MYO1DO94832 1006 aa12.04□□□□□ -0.48
USP53-201ENST00000274030 USP10Q14694 798 aaKnown RBP12.04□□□□□ -0.48
USP53-201ENST00000274030 CCDC85BQ15834 202 aaPredicted RBP12.04□□□□□ -0.48
USP53-201ENST00000274030 AMHR2Q16671 573 aa12.04□□□□□ -0.48
USP53-201ENST00000274030 DCAF6Q58WW2 860 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms