RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NFICP08651 508 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 TRPC3Q13507 836 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 CUL2Q13617 745 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 TRIM71Q2Q1W2 868 aaKnown RBP15.17■□□□□ 0.02
SS18-201ENST00000269137 FAM26DQ5JW98 314 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 UBXN11Q5T124 520 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 JADE1Q6IE81 842 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 SLC30A5Q8TAD4 765 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 TAF4BQ92750 862 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.17■□□□□ 0.02
SS18-201ENST00000269137 TSGA10Q9BZW7 698 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 UNC93B1Q9H1C4 597 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 MYO1AQ9UBC5 1043 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 NENFQ9UMX5 172 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 RCCD1A6NED2 376 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 PJA2O43164 708 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 KRT86O43790 486 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 KIF5CO60282 957 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 RPS6KA5O75582 802 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 THPOP40225 353 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 KIF5AQ12840 1032 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 ALKAL1Q6UXT8 129 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 KIF18AQ8NI77 898 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 OLIG1Q8TAK6 271 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 DHX38Q92620 1227 aaKnown RBP15.17■□□□□ 0.02
SS18-201ENST00000269137 FAXDC2Q96IV6 333 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 TSPAN18Q96SJ8 248 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 TRIM6Q9C030 488 aaPredicted RBP15.17■□□□□ 0.02
SS18-201ENST00000269137 LACRTQ9GZZ8 138 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 XYLT2Q9H1B5 865 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 CHST12Q9NRB3 414 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 TRMT13Q9NUP7 481 aaKnown RBP15.17■□□□□ 0.02
SS18-201ENST00000269137 SNTG2Q9NY99 539 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 NOD1Q9Y239 953 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 NUB1Q9Y5A7 615 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 ATP8B3O60423 1300 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 RALGAPA2Q2PPJ7 1873 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 A0A0U1RQG5 324 aaPredicted RBP15.16■□□□□ 0.02
SS18-201ENST00000269137 KBTBD13C9JR72 458 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 DDX3XO00571 662 aaKnown RBP eCLIP15.16■□□□□ 0.021e-15■■■□□ 17.7
SS18-201ENST00000269137 CTSHP09668 335 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 YARSP54577 528 aaKnown RBP15.16■□□□□ 0.02
SS18-201ENST00000269137 MYL6P60660 151 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 GNG11P61952 73 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 TMEM132DQ14C87 1099 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 NAB2Q15742 525 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 CCDC122Q5T0U0 273 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 SPOPLQ6IQ16 392 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 SYT10Q6XYQ8 523 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 C1orf127Q8N9H9 656 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 CXorf38Q8TB03 319 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 SNX27Q96L92 541 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 STARD7Q9NQZ5 370 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 SIX4Q9UIU6 781 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 NAGPAQ9UK23 515 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 ST3GAL5Q9UNP4 418 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 CNTN6Q9UQ52 1028 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 R3HCC1Q9Y3T6 440 aaKnown RBP15.16■□□□□ 0.02
SS18-201ENST00000269137 PAXBP1Q9Y5B6 917 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 TRIP11Q15643 1979 aa15.16■□□□□ 0.02
SS18-201ENST00000269137 DNM1LO00429 736 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 GPR182O15218 404 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 CYP26A1O43174 497 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 ABL1P00519 1130 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 ACO1P21399 889 aaKnown RBP15.15■□□□□ 0.02
SS18-201ENST00000269137 USP8P40818 1118 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 SCARA3Q6AZY7 606 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 ALKBH5Q6P6C2 394 aaKnown RBP15.15■□□□□ 0.02
SS18-201ENST00000269137 EPS8L1Q8TE68 723 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 ELMO3Q96BJ8 720 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 AGPAT1Q99943 283 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 NIF3L1Q9GZT8 377 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 VRTNQ9H8Y1 702 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 SQORQ9Y6N5 450 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 ARVCFO00192 962 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 ATICP31939 592 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 ZBTB6Q15916 424 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 XKR4Q5GH76 650 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 FBXO47Q5MNV8 452 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 LNX1Q8TBB1 728 aaPredicted RBP15.15■□□□□ 0.02
SS18-201ENST00000269137 ARID3AQ99856 593 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 IRX2Q9BZI1 471 aaPredicted RBP15.15■□□□□ 0.02
SS18-201ENST00000269137 NXF3Q9H4D5 531 aaKnown RBP15.15■□□□□ 0.02
SS18-201ENST00000269137 CNTN3Q9P232 1028 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 NOCTQ9UK39 431 aaKnown RBP15.15■□□□□ 0.02
SS18-201ENST00000269137 ITGA11Q9UKX5 1188 aa15.15■□□□□ 0.02
SS18-201ENST00000269137 UMODL1Q5DID0 1318 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 RECQL4O94761 1208 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 SGPL1O95470 568 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 STAU1O95793 577 aaKnown RBP15.14■□□□□ 0.01
SS18-201ENST00000269137 TNFAIP3P21580 790 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 BPIFB4P59827 614 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 C1QTNF8P60827 252 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 ZNF699Q32M78 642 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 TWF2Q6IBS0 349 aaKnown RBP15.14■□□□□ 0.01
SS18-201ENST00000269137 GLYCTKQ8IVS8 523 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 UBR7Q8N806 425 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 USP38Q8NB14 1042 aa15.14■□□□□ 0.01
SS18-201ENST00000269137 SMG8Q8ND04 991 aaKnown RBP15.14■□□□□ 0.01
SS18-201ENST00000269137 ZNF592Q92610 1267 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms