RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 PID1Q7Z2X4 250 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 SLC30A5Q8TAD4 765 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 SH3BP1Q9Y3L3 701 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 THEMIS2Q5TEJ8 643 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 TBC1D1Q86TI0 1168 aaPredicted RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 NUDCD3Q8IVD9 361 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 RBBP8NLQ8NC74 664 aaPredicted RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 C18orf8Q96DM3 657 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 MTIF3Q9H2K0 278 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 TEDDM1Q5T9Z0 273 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 PRAMEF18Q5VWM3 479 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 SLC26A7Q8TE54 656 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 USP33Q8TEY7 942 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 CENPKQ9BS16 269 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 EPB41L4AQ9HCS5 686 aaPredicted RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 EHD2Q9NZN4 543 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 STX18Q9P2W9 335 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 ARHGAP10A1A4S6 786 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 PDGFRBP09619 1106 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 HIF1AQ16665 826 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 GRAMD1BQ3KR37 738 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 DCP1BQ8IZD4 617 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 HIPK4Q8NE63 616 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 PPP2R3CQ969Q6 453 aa9.18□□□□□ -0.94
PTCD3-201ENST00000254630 EIF2AQ9BY44 585 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.18□□□□□ -0.94
PTCD3-201ENST00000254630 ASMTLO95671 621 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 ACADSBP45954 432 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 DEUP1Q05D60 604 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 PIGHQ14442 188 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 IL31Q6EBC2 164 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 ST13P4Q8IZP2 240 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 MARCH10Q8NA82 808 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 OR6P1Q8NGX9 317 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 DDX47Q9H0S4 455 aaKnown RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 KDM4CQ9H3R0 1056 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 XPO7Q9UIA9 1087 aaKnown RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 MRFAP1Q9Y605 127 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 TLR2O60603 784 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 HAUS5O94927 633 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 SKIP12755 728 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 AARSP49588 968 aaKnown RBP eCLIP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 WDR72Q3MJ13 1102 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 C1orf146Q5VVC0 180 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 FAM47EQ6ZV65 393 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 FBXO33Q7Z6M2 555 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 JMJD4Q9H9V9 463 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 BFARQ9NZS9 450 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 ITIH6Q6UXX5 1313 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 FAM205CA6NFA0 338 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 VCPP55072 806 aaKnown RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 SYCP2LQ5T4T6 812 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 PPP1R2P1Q96PQ5 205 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 NUDT12Q9BQG2 462 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 CCSER1Q9C0I3 900 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 CATSPERBQ9H7T0 1116 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 SYNDIG1Q9H7V2 258 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 WDR35Q9P2L0 1181 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 ATP6V1E1P36543 226 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 OR1G1P47890 313 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 MORF4L2Q15014 288 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 P3H1Q32P28 736 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 MGAT5BQ3V5L5 792 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 ARHGAP15Q53QZ3 475 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 NOTUMQ6P988 496 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 AGBL1Q96MI9 1066 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 YIPF2Q9BWQ6 316 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 ERAP1Q9NZ08 941 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 ADA2Q9NZK5 511 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 PPLO60437 1756 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 RRN3P2A6NIE6 340 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 TFRCP02786 760 aaKnown RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 TCF7P36402 384 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 DMTNQ08495 405 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 EZH2Q15910 746 aaKnown RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 CCDC144BQ3MJ40 725 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 RNPC3Q96LT9 517 aaKnown RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 METTL5Q9NRN9 209 aaKnown RBP9.17□□□□□ -0.94
PTCD3-201ENST00000254630 KIDINS220Q9ULH0 1771 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 IGSF9BQ9UPX0 1349 aa9.17□□□□□ -0.94
PTCD3-201ENST00000254630 NR3C2P08235 984 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 GUCY2CP25092 1073 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 LAMB3Q13751 1172 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 MAPRE2Q15555 327 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 ARHGEF26Q96DR7 871 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 ASPSCR1Q9BZE9 553 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 ADGRG1Q9Y653 693 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 FAM95CA0A1B0GW59 222 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 USP27XA6NNY8 438 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 HBP1O60381 514 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 PNMA6AP0CW24 399 aaPredicted RBP9.16□□□□□ -0.94
PTCD3-201ENST00000254630 ODC1P11926 461 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 PDCLQ13371 301 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 LAMC2Q13753 1193 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 MMS22LQ6ZRQ5 1243 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 ARHGAP18Q8N392 663 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 LRRC71Q8N4P6 559 aa9.16□□□□□ -0.94
PTCD3-201ENST00000254630 SLC7A14Q8TBB6 771 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms