RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 CLIC2O15247 247 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 TGFB1I1O43294 461 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 MYL1P05976 194 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 CNPP09543 421 aaKnown RBP13.78□□□□□ -0.2
LSM5-201ENST00000223084 RPL17P18621 184 aaKnown RBP13.78□□□□□ -0.2
LSM5-201ENST00000223084 DSG1Q02413 1049 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 FAM160A1Q05DH4 1040 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 PNOCQ13519 176 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 KCNC3Q14003 757 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 ZBTB6Q15916 424 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 AAK1Q2M2I8 961 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 USP41Q3LFD5 358 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 LEXMQ3ZCV2 418 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 TJAP1Q5JTD0 557 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 RTP2Q5QGT7 225 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 FAM171A1Q5VUB5 890 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 PRSS55Q6UWB4 352 aaPredicted RBP13.78□□□□□ -0.2
LSM5-201ENST00000223084 CEP57Q86XR8 500 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 RIN2Q8WYP3 895 aaPredicted RBP13.78□□□□□ -0.2
LSM5-201ENST00000223084 DDX27Q96GQ7 796 aaKnown RBP13.78□□□□□ -0.2
LSM5-201ENST00000223084 KLHL5Q96PQ7 755 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 CHST7Q9NS84 486 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 STK39Q9UEW8 545 aa13.78□□□□□ -0.2
LSM5-201ENST00000223084 SF3B1O75533 1304 aaKnown RBP eCLIP13.78□□□□□ -0.23e-7■■■■■ 27.3
LSM5-201ENST00000223084 TMEM189-UBE2V1I3L0A0 370 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 UBE4BO95155 1302 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 BMP1P13497 986 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 EPCAMP16422 314 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 KLRC2P26717 231 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 RPL9P32969 192 aaKnown RBP13.77□□□□□ -0.21
LSM5-201ENST00000223084 PSMD2Q13200 908 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 TMEM132DQ14C87 1099 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 GLYCTKQ8IVS8 523 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 CD302Q8IX05 232 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 SLC22A17Q8WUG5 538 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 ERCC4Q92889 916 aaPredicted RBP13.77□□□□□ -0.21
LSM5-201ENST00000223084 FAM84AQ96KN4 292 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 TTPALQ9BTX7 342 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 APOL5Q9BWW9 433 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 EMILIN2Q9BXX0 1053 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 AGPAT3Q9NRZ7 376 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 UBQLN1Q9UMX0 589 aaKnown RBP13.77□□□□□ -0.21
LSM5-201ENST00000223084 HCFC2Q9Y5Z7 792 aa13.77□□□□□ -0.21
LSM5-201ENST00000223084 SPTBN5Q9NRC6 3674 aaKnown RBP13.77□□□□□ -0.21
LSM5-201ENST00000223084 PPEF2O14830 753 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 TEX28O15482 410 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 EXTL3O43909 919 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 IL9P15248 144 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 COL9A1P20849 921 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 TKTP29401 623 aaKnown RBP13.76□□□□□ -0.21
LSM5-201ENST00000223084 CYP2J2P51589 502 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 ELAVL2Q12926 359 aaKnown RBP13.76□□□□□ -0.21
LSM5-201ENST00000223084 KNOP1Q1ED39 458 aaKnown RBP13.76□□□□□ -0.21
LSM5-201ENST00000223084 BMT2Q1RMZ1 405 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 SPATA1Q5VX52 437 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 PTCRAQ6ISU1 281 aaPredicted RBP13.76□□□□□ -0.21
LSM5-201ENST00000223084 KANK3Q6NY19 840 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 CBWD2Q8IUF1 395 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 BRSK2Q8IWQ3 736 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 EFCAB13Q8IY85 973 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 GPD1LQ8N335 351 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 MSLNLQ96KJ4 702 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 ASB7Q9H672 318 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 RBAKQ9NYW8 714 aaPredicted RBP13.76□□□□□ -0.21
LSM5-201ENST00000223084 HSPBP1Q9NZL4 362 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 CD207Q9UJ71 328 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 SCN1AP35498 2009 aa13.76□□□□□ -0.21
LSM5-201ENST00000223084 XIRP2A4UGR9 3374 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 GRXCR2A6NFK2 248 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 XPOTO43592 962 aaKnown RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 RHOBTB3O94955 611 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 IL18RAPO95256 599 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 LDHAP00338 332 aaKnown RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 CYP3A5P20815 502 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 FGFR3P22607 806 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 LRPAP1P30533 357 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 MCM4P33991 863 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 SCARA3Q6AZY7 606 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 ANKRD54Q6NXT1 300 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 SYCE2Q6PIF2 218 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 TMEM184AQ6ZMB5 413 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 PALB2Q86YC2 1186 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 C12orf76Q8N812 135 aaPredicted RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 RDH13Q8NBN7 331 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 BEST2Q8NFU1 509 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 LNX1Q8TBB1 728 aaPredicted RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 FEZF2Q8TBJ5 459 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 CASP10Q92851 521 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 CCDC47Q96A33 483 aaKnown RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 IPO9Q96P70 1041 aaKnown RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 NECAB3Q96P71 396 aaPredicted RBP13.75□□□□□ -0.21
LSM5-201ENST00000223084 RXFP1Q9HBX9 757 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 PDE11AQ9HCR9 933 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 MAPK8IP1Q9UQF2 711 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 SSX2IPQ9Y2D8 614 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 DERAQ9Y315 318 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 NUB1Q9Y5A7 615 aa13.75□□□□□ -0.21
LSM5-201ENST00000223084 PLXNA3P51805 1871 aa13.74□□□□□ -0.21
LSM5-201ENST00000223084 FSD2A1L4K1 749 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms