RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Odr4Q4PJX1 447 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Nlrp4fQ66X05 959 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Cdk9Q99J95 372 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Q99KU6 348 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Tmx2Q9D710 295 aaKnown RBP17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Kcnk16G5E845 292 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Has3O08650 554 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Scp2P32020 547 aaKnown RBP17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Cdc25cP48967 447 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Adcy8P97490 1249 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 GclcP97494 637 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Rcn1Q05186 325 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Klra3Q64329 266 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Cyfip1Q7TMB8 1253 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Tmc8Q7TN58 722 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Zfp449Q8CB76 518 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 AdigQ8R400 80 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Rbp7Q9EPC5 134 aa17.46■□□□□ 0.39
Shh-201ENSMUST00000002708 Vmn2r15L7N2A0 855 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 P01734 135 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Fmr1P35922 614 aaKnown RBP17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Apba2P98084 750 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Ccdc125Q5U465 500 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Klra7Q60654 280 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Kbtbd3Q8BHI4 607 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Lman1lQ8VCD3 505 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 DaglbQ91WC9 669 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Map3k20Q9ESL4 802 aaKnown RBP17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Uts2Q9QZQ3 123 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Gyg1Q9R062 333 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 6030498E09RikB1AX85 169 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 AunipE9Q6Z5 340 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Pitpnm1O35954 1243 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 SnrpfP62307 86 aaKnown RBP17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Neurl1bQ0MW30 546 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Klrb1Q0ZUP1 214 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Spdye4aQ5IBH6 268 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 C2cd2lQ80X80 706 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Fbxl13Q8CDU4 790 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Zbtb44Q8R0A2 453 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Usp11Q99K46 921 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Dnajc18Q9CZJ9 357 aa17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Wdr83Q9DAJ4 315 aaKnown RBP17.45■□□□□ 0.38
Shh-201ENSMUST00000002708 Slfn8B1ARD8 910 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Pus7B7ZNL8 666 aaKnown RBP17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Per1O35973 1291 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Ctnnal1O88327 731 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Mfsd14aP70187 490 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Nrp1P97333 923 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Trim21Q62191 470 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Phc1Q64028 1012 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Krt77Q6IFZ6 572 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Mapk4Q6P5G0 583 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Leg1Q8C6C9 337 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Cfap36Q8C6E0 343 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Ifnb1P01575 182 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Cxcr2P35343 359 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 RalaP63321 206 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Pih1d3Q3KNI6 218 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Tmprss11eQ5S248 423 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Usp37Q8C0R0 979 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Ttc1Q91Z38 292 aa17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Chchd3Q9CRB9 227 aaKnown RBP17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Riok3Q9DBU3 519 aaKnown RBP17.44■□□□□ 0.38
Shh-201ENSMUST00000002708 Zscan4-ps3A0A1B0GRH6 506 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Zscan4-ps2A0A1C7CYU6 506 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Glt1d1A4FUP9 346 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Rfx8D3YU81 596 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Psmc4P54775 418 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Cops2P61202 443 aaKnown RBP17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Ccdc117Q6PB51 277 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 C8aQ8K182 587 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Rpa1Q8VEE4 623 aaKnown RBP17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Bcs1lQ9CZP5 418 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Kcnq4Q9JK97 696 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Tmed2Q9R0Q3 201 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Gm11549A0A286YD83 63 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 PrkceP16054 737 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Pid1Q3UBG2 217 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Gucy2fQ5SDA5 1108 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Tcf12Q61286 706 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Scaf8Q6DID3 1268 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 A430089I19RikQ8C9W1 407 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Gnl3Q8CI11 538 aaKnown RBP17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Ces1fQ91WU0 561 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Htra2Q9JIY5 458 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Orc3Q9JK30 715 aaKnown RBP17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Olig1Q9JKN5 260 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 H2-OaQ9QWV1 250 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Cyth1Q9QX11 398 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Zfp275G3X904 499 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Gm21962L7N280 338 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Slc1a1P51906 523 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Capn13Q3UW68 665 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Plk4Q64702 925 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 WlsQ6DID7 541 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Ccdc40Q8BI79 1192 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Polr3fQ921X6 316 aa17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 TarsQ9D0R2 722 aaKnown RBP17.43■□□□□ 0.38
Shh-201ENSMUST00000002708 Nop56Q9D6Z1 580 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 22,080 RNA–protein pairs in 35.5 ms