RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SYTL1Q8IYJ3 562 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RNF217Q8TC41 542 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 C17orf50Q8WW18 174 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 STAMBPL1Q96FJ0 436 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ZFYVE19Q96K21 471 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CDK5RAP1Q96SZ6 601 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 ELAC2Q9BQ52 826 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 TJP2Q9UDY2 1190 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 PLA2G4CQ9UP65 541 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 SH3BP1Q9Y3L3 701 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 MYO5AQ9Y4I1 1855 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ANKRD17O75179 2603 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ATP8B1O43520 1251 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ASNA1O43681 348 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HIST1H2ABP04908 130 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RPIAP49247 311 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 STX5Q13190 355 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HIF1AQ16665 826 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 C1orf146Q5VVC0 180 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PADI6Q6TGC4 694 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HIST3H2AQ7L7L0 130 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC105Q8IYK2 499 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 C17orf53Q8N3J3 647 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KCNN1Q92952 543 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HIST1H2ACQ93077 130 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TSR2Q969E8 191 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KIAA1143Q96AT1 154 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SEZ6LQ9BYH1 1024 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ENTPD7Q9NQZ7 604 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ATP6V1HQ9UI12 483 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SNX5Q9Y5X3 404 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MAGI1Q96QZ7 1491 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FAM170AA1A519 330 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CCRL2O00421 344 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PDE9AO76083 593 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FCER1AP12319 257 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TMEM110Q86TL2 294 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ZBTB8BQ8NAP8 495 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RAPGEF5Q92565 580 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FSD1LQ9BXM9 530 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF3Q9NR81 526 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MCM9Q9NXL9 1143 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 UVRAGQ9P2Y5 699 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MRTO4Q9UKD2 239 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 H3BM21 787 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CYB5BO43169 146 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ACSL4O60488 711 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FGF19O95750 216 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CPB1P15086 417 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HIBADHP31937 336 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 GUCY1A2P33402 732 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ATN1P54259 1190 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KCNB1Q14721 858 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SF3B3Q15393 1217 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FUT8Q9BYC5 575 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SLC29A3Q9BZD2 475 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 LRMDAQ9H2I8 198 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 IGFLR1Q9H665 355 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MTO1Q9Y2Z2 717 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 COLEC10Q9Y6Z7 277 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RHPN2P1A8MT19 583 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TEX46H3BTG2 121 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TNPO2O14787 897 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 BCAR3O75815 825 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 XRCC5P13010 732 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TNNI1P19237 187 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PIK3CGP48736 1102 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ITGB3BPQ13352 177 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KRT72Q14CN4 511 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 BMT2Q1RMZ1 405 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ANO4Q32M45 955 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TWISTNBQ3B726 338 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ITPRIPL1Q6GPH6 555 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 C16orf59Q7L2K0 433 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TTLL6Q8N841 843 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TBC1D32Q96NH3 1257 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CCT8L2Q96SF2 557 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SPON2Q9BUD6 331 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 MRIQ9BWK5 157 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SPINK5Q9NQ38 1064 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 USP40Q9NVE5 1235 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KCTD5Q9NXV2 234 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 IMPACTQ9P2X3 320 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 UXTQ9UBK9 157 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 HACL1Q9UJ83 578 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PLXNC1O60486 1568 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 GGPS1O95749 300 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FGGP02679 453 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PIM1P11309 404 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 IGFBP4P22692 258 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 VAMP7P51809 220 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 EIF3BP55884 814 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ALCAMQ13740 583 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 RAPGEF1Q13905 1077 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 TOMM20Q15388 145 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC142Q17RM4 750 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 C6orf10Q5SRN2 563 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ALS2CLQ60I27 953 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ASPSCR1Q9BZE9 553 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PIGUQ9H490 435 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms