RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CELF2-AS1Q8N7Q2 184 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 CDYL2Q8N8U2 506 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 GSTCDQ8NEC7 633 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 CEP95Q96GE4 821 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 PHACTR3Q96KR7 559 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 MAGEB10Q96LZ2 347 aaPredicted RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 IPO9Q96P70 1041 aaKnown RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 CDC6Q99741 560 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 ZSWIM1Q9BR11 485 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 FDXACB1Q9BRP7 624 aaPredicted RBP0.97□□□□□ -2.25
VPS35-212ENST00000640313 MYL10Q9BUA6 226 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 ST7Q9NRC1 585 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 INPP5FQ9Y2H2 1132 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 AFG3L2Q9Y4W6 797 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 PCDHB6Q9Y5E3 794 aa0.97□□□□□ -2.25
VPS35-212ENST00000640313 CD8B2A6NJW9 211 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 LINC00473A8K010 186 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 CXorf49A8MYA2 514 aaPredicted RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 ADM5C9JUS6 153 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 ADAMTS3O15072 1205 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 SMAD6O43541 496 aaKnown RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 NRP2O60462 931 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 SNRPA1P09661 255 aaKnown RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 LTA4HP09960 611 aaKnown RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 TMEM191BP0C7N4 346 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 CYP2D6P10635 497 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 PTX3P26022 381 aaPredicted RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 HSD11B2P80365 405 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 MEF2AQ02078 507 aaPredicted RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 RASA3Q14644 834 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 NPY5RQ15761 445 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 LONRF2Q1L5Z9 754 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 PROSER3Q2NL68 480 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 TMEM119Q4V9L6 283 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 ABHD17CQ6PCB6 329 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 TMPRSS12Q86WS5 348 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 VPS37DQ86XT2 251 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 RASAL3Q86YV0 1011 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 DCP1BQ8IZD4 617 aaKnown RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 GALNT16Q8N428 558 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 C7orf31Q8N865 590 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 IGSF22Q8N9C0 903 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 Q8NA96 180 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 ZBTB38Q8NAP3 1195 aaPredicted RBP0.96□□□□□ -2.26
VPS35-212ENST00000640313 SLC35B2Q8TB61 432 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 MDM1Q8TC05 714 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 PIGOQ8TEQ8 1089 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 SNX33Q8WV41 574 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 GAB3Q8WWW8 586 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 TFAP2BQ92481 460 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 FERMT2Q96AC1 680 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 SCLYQ96I15 445 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 FBXL20Q96IG2 436 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 PGBD1Q96JS3 809 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 EXOC2Q96KP1 924 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 MED15Q96RN5 788 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 DHRS4Q9BTZ2 278 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 TGIF2Q9GZN2 237 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 HIPK2Q9H2X6 1198 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 SLC52A2Q9HAB3 445 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 PODXL2Q9NZ53 605 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 GPRC5DQ9NZD1 345 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 SERGEFQ9UGK8 458 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 AATKQ6ZMQ8 1374 aa0.96□□□□□ -2.26
VPS35-212ENST00000640313 TTC3P53804 2025 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 TRGV11A0A075B6L2 103 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 LY6G6EA0A0G2JKS1 128 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 SMIM35A0A1B0GVV1 85 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 TCRBV16S1A1N1A0A5B0 115 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 WDR27A2RRH5 827 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 KCNU1A8MYU2 1149 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 TISP43B9A030 160 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 PRRT4C9JH25 899 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 KCNQ2O43526 872 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ITGA10O75578 1167 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 KRT37O76014 449 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 PCDH8O95206 1070 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 APOL3O95236 402 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 RECKO95980 971 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 FGBP02675 491 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 SCP2P22307 547 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 XPAP23025 273 aaPredicted RBP0.95□□□□□ -2.26
VPS35-212ENST00000640313 CRHR1P34998 444 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 NRG3P56975 720 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 HDLBPQ00341 1268 aaKnown RBP0.95□□□□□ -2.26
VPS35-212ENST00000640313 RHDQ02161 417 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 UBXN2BQ14CS0 331 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 LRRC41Q15345 812 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ZNF174Q15697 407 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 TXNRD1Q16881 649 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 GEN1Q17RS7 908 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 LEXMQ3ZCV2 418 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 TRIM61Q5EBN2 209 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 PRAMEF14Q5SWL7 426 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 C9orf50Q5SZB4 431 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 GFI1BQ5VTD9 330 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 HIST2H2BCQ6DN03 193 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 ESRP1Q6NXG1 681 aaKnown RBP0.95□□□□□ -2.26
VPS35-212ENST00000640313 LMBR1LQ6UX01 489 aa0.95□□□□□ -2.26
VPS35-212ENST00000640313 NPNTQ6UXI9 565 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms