RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 GRM2Q14416 872 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 ZNF528Q3MIS6 628 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 RSPO2Q6UXX9 243 aaPredicted RBP16.54■□□□□ 0.24
SYNE2-228ENST00000639659 DIS3L2Q8IYB7 885 aaKnown RBP16.54■□□□□ 0.24
SYNE2-228ENST00000639659 TNFRSF25Q93038 417 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 PLA2G2FQ9BZM2 168 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 DLL3Q9NYJ7 618 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 MTRRQ9UBK8 725 aa16.54■□□□□ 0.24
SYNE2-228ENST00000639659 PRRG1O14668 218 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 NCAM2O15394 837 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 FGFR3P22607 806 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 ELF1P32519 619 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 NAB2Q15742 525 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 LPAL2Q16609 132 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 FAM187BQ17R55 369 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 SLC5A9Q2M3M2 681 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 DCAF4L1Q3SXM0 396 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 PADI6Q6TGC4 694 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 ZNF852Q6ZMS4 543 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 CATSPER3Q86XQ3 398 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 DDX27Q96GQ7 796 aaKnown RBP16.53■□□□□ 0.24
SYNE2-228ENST00000639659 CORO1BQ9BR76 489 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 TMEM60Q9H2L4 133 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 ZSCAN32Q9NX65 697 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 CDV3Q9UKY7 258 aaKnown RBP16.53■□□□□ 0.24
SYNE2-228ENST00000639659 KCNH3Q9ULD8 1083 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 PCDHGA2Q9Y5H1 932 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 GPR179Q6PRD1 2367 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 NOTCH4Q99466 2003 aa16.53■□□□□ 0.24
SYNE2-228ENST00000639659 NCOR2Q9Y618 2525 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 ACKR2O00590 384 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 SPATA31C1P0DKV0 1188 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 FDPSP14324 419 aaKnown RBP16.52■□□□□ 0.24
SYNE2-228ENST00000639659 MAGEA9P43362 315 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 OSTNP61366 133 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 UVSSAQ2YD98 709 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 TANGO2Q6ICL3 276 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 CNTNAP3BQ96NU0 1288 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 NACC1Q96RE7 527 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 CNTNAP3Q9BZ76 1288 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 OSBPL6Q9BZF3 934 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 BRD9Q9H8M2 597 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 TUFT1Q9NNX1 390 aa16.52■□□□□ 0.24
SYNE2-228ENST00000639659 MRPS17Q9Y2R5 130 aaKnown RBP16.52■□□□□ 0.24
SYNE2-228ENST00000639659 TRIP11Q15643 1979 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 EPB41L2O43491 1005 aaKnown RBP16.51■□□□□ 0.23
SYNE2-228ENST00000639659 TRAPPC3O43617 180 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 ECI2O75521 394 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 LARGE1O95461 756 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 XRCC6P12956 609 aaKnown RBP eCLIP16.51■□□□□ 0.23
SYNE2-228ENST00000639659 NAMPTP43490 491 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 GUCY1B3Q02153 619 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 PPP2R5AQ15172 486 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 ATF7IP2Q5U623 682 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 ANKS3Q6ZW76 656 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 C3orf58Q8NDZ4 430 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 ERMNQ8TAM6 284 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 IFT74Q96LB3 600 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 MTMR9Q96QG7 549 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 CCDC113Q9H0I3 377 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 GMEB2Q9UKD1 530 aa16.51■□□□□ 0.23
SYNE2-228ENST00000639659 JAK2O60674 1132 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 POU2F2P09086 479 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 HARSP12081 509 aaKnown RBP16.5■□□□□ 0.23
SYNE2-228ENST00000639659 PTPN2P17706 415 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 YARSP54577 528 aaKnown RBP16.5■□□□□ 0.23
SYNE2-228ENST00000639659 ROR1Q01973 937 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 MTAPQ13126 283 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 CEP120Q8N960 986 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 TCEAL4Q96EI5 215 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 PPP1R10Q96QC0 940 aaKnown RBP16.5■□□□□ 0.23
SYNE2-228ENST00000639659 NELL2Q99435 816 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 CYP4F11Q9HBI6 524 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 GDE1Q9NZC3 331 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 RAB23Q9ULC3 237 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 BACE2Q9Y5Z0 518 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 DNAH14Q0VDD8 3507 aa16.5■□□□□ 0.23
SYNE2-228ENST00000639659 TMEM189-UBE2V1I3L0A0 370 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 CYP11B2P19099 503 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 KCNA4P22459 653 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 ATXN1P54253 815 aaKnown RBP16.49■□□□□ 0.23
SYNE2-228ENST00000639659 LMNB2Q03252 620 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 ADCY1Q08828 1119 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 ANKRD1Q15327 319 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 UPP1Q16831 310 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 NT5DC1Q5TFE4 455 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 PRR23BQ6ZRT6 265 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 PDZD4Q76G19 769 aaPredicted RBP16.49■□□□□ 0.23
SYNE2-228ENST00000639659 APBB1IPQ7Z5R6 666 aaPredicted RBP16.49■□□□□ 0.23
SYNE2-228ENST00000639659 ZBTB44Q8NCP5 570 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 GTF3C6Q969F1 213 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 ELSPBP1Q96BH3 223 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 UROC1Q96N76 676 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 CCDC94Q9BW85 323 aaPredicted RBP16.49■□□□□ 0.23
SYNE2-228ENST00000639659 EPC1Q9H2F5 836 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 ZFP14Q9HCL3 533 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 NUB1Q9Y5A7 615 aa16.49■□□□□ 0.23
SYNE2-228ENST00000639659 WDR27A2RRH5 827 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 DCDC2BA2VCK2 349 aa16.48■□□□□ 0.23
SYNE2-228ENST00000639659 CCDC169A6NNP5 214 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms