RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 UPP1Q16831 310 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 SLC44A4Q53GD3 710 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 GLRA4Q5JXX5 417 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 TTC38Q5R3I4 469 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 NT5DC1Q5TFE4 455 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 DDX23Q9BUQ8 820 aaKnown RBP19.64■□□□□ 0.73
CIITA-215ENST00000637439 BHMT2Q9H2M3 363 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 DNMT3BQ9UBC3 853 aaKnown RBP19.64■□□□□ 0.73
CIITA-215ENST00000637439 TNFSF13BQ9Y275 285 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 PHLPP2Q6ZVD8 1323 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 MIA3Q5JRA6 1907 aa19.64■□□□□ 0.73
CIITA-215ENST00000637439 NEFLP07196 543 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 TRAPPC10P48553 1259 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 FXR2P51116 673 aaKnown RBP eCLIP19.63■□□□□ 0.73
CIITA-215ENST00000637439 GNL2Q13823 731 aaKnown RBP19.63■□□□□ 0.73
CIITA-215ENST00000637439 NPAS3Q8IXF0 933 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 DDX27Q96GQ7 796 aaKnown RBP19.63■□□□□ 0.73
CIITA-215ENST00000637439 LLPHQ9BRT6 129 aaKnown RBP19.63■□□□□ 0.73
CIITA-215ENST00000637439 KIFC3Q9BVG8 833 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 CCDC94Q9BW85 323 aaPredicted RBP19.63■□□□□ 0.73
CIITA-215ENST00000637439 RAB34Q9BZG1 259 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 SLC38A7Q9NVC3 462 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 HCFC1R1Q9NWW0 138 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 GDE1Q9NZC3 331 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 LRWD1Q9UFC0 647 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 LIMCH1Q9UPQ0 1083 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 MRPS23Q9Y3D9 190 aaKnown RBP19.63■□□□□ 0.73
CIITA-215ENST00000637439 FANCMQ8IYD8 2048 aa19.63■□□□□ 0.73
CIITA-215ENST00000637439 EP300Q09472 2414 aaPredicted RBP19.62■□□□□ 0.73
CIITA-215ENST00000637439 DCHS1Q96JQ0 3298 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 SMIM28A0A1B0GU29 152 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 GLULP15104 373 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 TKTP29401 623 aaKnown RBP19.62■□□□□ 0.73
CIITA-215ENST00000637439 GRM5P41594 1212 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 PDIA5Q14554 519 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 ZNF528Q3MIS6 628 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 RUBCNQ92622 972 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 NELL2Q99435 816 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 KXD1Q9BQD3 176 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 AVENQ9NQS1 362 aaPredicted RBP19.62■□□□□ 0.73
CIITA-215ENST00000637439 FBXO4Q9UKT5 387 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 NOL7Q9UMY1 257 aaKnown RBP19.62■□□□□ 0.73
CIITA-215ENST00000637439 KIAA1024Q9UPX6 916 aa19.62■□□□□ 0.73
CIITA-215ENST00000637439 LAMTOR5O43504 91 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 ECI2O75521 394 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 ELF1P32519 619 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 ST3GAL1Q11201 340 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 UBXN2BQ14CS0 331 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 XKR4Q5GH76 650 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 SLC8B1Q6J4K2 584 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 FBXO18Q8NFZ0 1043 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 ZNF461Q8TAF7 563 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 ACO2Q99798 780 aaKnown RBP19.61■□□□□ 0.73
CIITA-215ENST00000637439 HINFPQ9BQA5 517 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 TMEM134Q9H6X4 195 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 SPATA6Q9NWH7 488 aaPredicted RBP19.61■□□□□ 0.73
CIITA-215ENST00000637439 TRIP11Q15643 1979 aa19.61■□□□□ 0.73
CIITA-215ENST00000637439 FRYLO94915 3013 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 NOTCH4Q99466 2003 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 ARHGEF37A1IGU5 675 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 FAM170BA6NMN3 283 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 CCDC169A6NNP5 214 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 NCAM2O15394 837 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 KINO60870 393 aaKnown RBP19.6■□□□□ 0.73
CIITA-215ENST00000637439 LRRN2O75325 713 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 LRG1P02750 347 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 RHOP08100 348 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 PTPN2P17706 415 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 HMGN5P82970 282 aaKnown RBP19.6■□□□□ 0.73
CIITA-215ENST00000637439 ECM1Q16610 540 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 ZNF568Q3ZCX4 644 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 ZBTB41Q5SVQ8 909 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 CD300LGQ6UXG3 332 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 ALKAL1Q6UXT8 129 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 ING5Q8WYH8 240 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 MRPL4Q9BYD3 311 aaKnown RBP19.6■□□□□ 0.73
CIITA-215ENST00000637439 CDT1Q9H211 546 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 GOLGA2P5Q9HBQ8 144 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 POLD4Q9HCU8 107 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 DDX19AQ9NUU7 478 aaKnown RBP19.6■□□□□ 0.73
CIITA-215ENST00000637439 DNM3Q9UQ16 869 aa19.6■□□□□ 0.73
CIITA-215ENST00000637439 RBM19Q9Y4C8 960 aaKnown RBP19.6■□□□□ 0.73
CIITA-215ENST00000637439 CACNA1IQ9P0X4 2223 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 H7C4K7 107 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 I3L4J1 428 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 PRRG1O14668 218 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 SYN3O14994 580 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 ABLIM3O94929 683 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 IGFBP6P24592 240 aaPredicted RBP19.59■□□□□ 0.73
CIITA-215ENST00000637439 BRCC3P46736 316 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 NPTX2P47972 431 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 PEX3P56589 373 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 ROR1Q01973 937 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 DMP1Q13316 513 aaPredicted RBP19.59■□□□□ 0.73
CIITA-215ENST00000637439 CCDC83Q8IWF9 413 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 KIAA2013Q8IYS2 634 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 MAML2Q8IZL2 1156 aaPredicted RBP19.59■□□□□ 0.73
CIITA-215ENST00000637439 C4orf32Q8N8J7 132 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 C3orf58Q8NDZ4 430 aa19.59■□□□□ 0.73
CIITA-215ENST00000637439 SNX29Q8TEQ0 813 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms