RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PTPAQ15257 358 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 PTPN14Q15678 1187 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 PPFIBP1Q86W92 1011 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 GSTCDQ8NEC7 633 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 HASPINQ8TF76 798 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 SPIRE2Q8WWL2 714 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 EPSTI1Q96J88 318 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 CLIC6Q96NY7 704 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 KLHL5Q96PQ7 755 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 USP28Q96RU2 1077 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 ACO2Q99798 780 aaKnown RBP12.74□□□□□ -0.37
CLN3-257ENST00000637110 HERC2P3Q9BVR0 1158 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 VN1R3Q9BXE9 311 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 MARCH5Q9NX47 278 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 ARHGAP28Q9P2N2 729 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 ANKFY1Q9P2R3 1169 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 CACNG4Q9UBN1 327 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 DUSP12Q9UNI6 340 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 MAP1BP46821 2468 aaKnown RBP12.74□□□□□ -0.37
CLN3-257ENST00000637110 F8W810 466 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 H0YCG3 227 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 EPCAMP16422 314 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 HSP90AA2PQ14568 343 aaPredicted RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 FOXD4L6Q3SYB3 417 aaPredicted RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 ARSHQ5FYA8 562 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 GLRA4Q5JXX5 417 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 RARS2Q5T160 578 aaKnown RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 KIAA0319Q5VV43 1072 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 RRAGBQ5VZM2 374 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 FUT10Q6P4F1 479 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 FOXD4L3Q6VB84 417 aaPredicted RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 OTOP3Q7RTS5 596 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 TAS1R1Q7RTX1 841 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 CEP57Q86XR8 500 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 GPR161Q8N6U8 529 aaKnown RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 LARP4BQ92615 738 aaKnown RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 ZNF396Q96N95 335 aaPredicted RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 ACAP3Q96P50 834 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 REEP2Q9BRK0 252 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 CCSER1Q9C0I3 900 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 CDT1Q9H211 546 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 TOPORSQ9NS56 1045 aaPredicted RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 FBXO2Q9UK22 296 aaPredicted RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 ODF2LQ9ULJ1 636 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 SRPRBQ9Y5M8 271 aaKnown RBP12.73□□□□□ -0.37
CLN3-257ENST00000637110 IRAK3Q9Y616 596 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 ZFHX4Q86UP3 3567 aa12.73□□□□□ -0.37
CLN3-257ENST00000637110 MYH11P35749 1972 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 DENND4AQ7Z401 1863 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 ZMYM2Q9UBW7 1377 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 BAHCC1Q9P281 2608 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 K7ENM7 598 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 PTGESO14684 152 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 ADH1AP07327 375 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 CNPP09543 421 aaKnown RBP12.72□□□□□ -0.37
CLN3-257ENST00000637110 MYBP10242 640 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 MCF2P10911 925 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 DDIT3P35638 169 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 GRM5P41594 1212 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 USP41Q3LFD5 358 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 MPZL3Q6UWV2 235 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 USP49Q70CQ1 688 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 TAS1R3Q7RTX0 852 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 HAUS6Q7Z4H7 955 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 GLYCTKQ8IVS8 523 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 C12orf76Q8N812 135 aaPredicted RBP12.72□□□□□ -0.37
CLN3-257ENST00000637110 CEP120Q8N960 986 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 KRI1Q8N9T8 703 aaKnown RBP12.72□□□□□ -0.37
CLN3-257ENST00000637110 TMEM161BQ8NDZ6 487 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 B3GALT6Q96L58 329 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 NTPCRQ9BSD7 190 aaKnown RBP12.72□□□□□ -0.37
CLN3-257ENST00000637110 PANK2Q9BZ23 570 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 CXCL16Q9H2A7 254 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 PARVGQ9HBI0 331 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 BLOC1S4Q9NUP1 217 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 TFIP11Q9UBB9 837 aaKnown RBP12.72□□□□□ -0.37
CLN3-257ENST00000637110 DAXXQ9UER7 740 aaPredicted RBP12.72□□□□□ -0.37
CLN3-257ENST00000637110 ADAM28Q9UKQ2 775 aa12.72□□□□□ -0.37
CLN3-257ENST00000637110 SF3B1O75533 1304 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLN3-257ENST00000637110 TULP1O00294 542 aaPredicted RBP12.71□□□□□ -0.37
CLN3-257ENST00000637110 CLDN3O15551 220 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 TRAK2O60296 914 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 WEE2P0C1S8 567 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 MAPTP10636 758 aaKnown RBP12.71□□□□□ -0.37
CLN3-257ENST00000637110 LIG4P49917 911 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 SLC39A14Q15043 492 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 ELMSAN1Q6PJG2 1045 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 CCDC149Q6ZUS6 474 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 DYMQ7RTS9 669 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 SLC22A17Q8WUG5 538 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 RIN2Q8WYP3 895 aaPredicted RBP12.71□□□□□ -0.37
CLN3-257ENST00000637110 BORCS6Q96GS4 357 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 ZBTB45Q96K62 511 aaPredicted RBP12.71□□□□□ -0.37
CLN3-257ENST00000637110 PAAF1Q9BRP4 392 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 GPR62Q9BZJ7 368 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 IGSF9Q9P2J2 1179 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 WNT16Q9UBV4 365 aa12.71□□□□□ -0.37
CLN3-257ENST00000637110 CHD6Q8TD26 2715 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 TEX28O15482 410 aa12.7□□□□□ -0.38
CLN3-257ENST00000637110 KINO60870 393 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms