RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RUSC1Q9BVN2 902 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 TARS2Q9BW92 718 aaKnown RBP17.74■□□□□ 0.43
CLN3-246ENST00000636228 FOXQ1Q9C009 403 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 CDT1Q9H211 546 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 DNMT3BQ9UBC3 853 aaKnown RBP17.74■□□□□ 0.43
CLN3-246ENST00000636228 MTRRQ9UBK8 725 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 DNM3Q9UQ16 869 aa17.74■□□□□ 0.43
CLN3-246ENST00000636228 TMEM189-UBE2V1I3L0A0 370 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 EIF5BO60841 1220 aaKnown RBP17.73■□□□□ 0.43
CLN3-246ENST00000636228 XYLBO75191 536 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 HARSP12081 509 aaKnown RBP17.73■□□□□ 0.43
CLN3-246ENST00000636228 U2AF2P26368 475 aaKnown RBP eCLIP17.73■□□□□ 0.43
CLN3-246ENST00000636228 GRM5P41594 1212 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 RAD51AP2Q09MP3 1159 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 SNW1Q13573 536 aaKnown RBP17.73■□□□□ 0.43
CLN3-246ENST00000636228 ZRSR1Q15695 479 aaKnown RBP17.73■□□□□ 0.43
CLN3-246ENST00000636228 ZNF568Q3ZCX4 644 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 PDXDC1Q6P996 788 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 ALKAL1Q6UXT8 129 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 DDX27Q96GQ7 796 aaKnown RBP17.73■□□□□ 0.43
CLN3-246ENST00000636228 KXD1Q9BQD3 176 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 PTPRHQ9HD43 1115 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 SLC2A4RGQ9NR83 387 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 SIT1Q9Y3P8 196 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 R4GN57 208 aa17.73■□□□□ 0.43
CLN3-246ENST00000636228 GLULP15104 373 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 HOXA9P31269 272 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 YARSP54577 528 aaKnown RBP17.72■□□□□ 0.43
CLN3-246ENST00000636228 ARPP19P56211 112 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 SEZ6Q53EL9 994 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 KRT79Q5XKE5 535 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 PHLDB3Q6NSJ2 640 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 RINT1Q6NUQ1 792 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 TMEM130Q8N3G9 435 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 C18orf25Q96B23 403 aaPredicted RBP17.72■□□□□ 0.43
CLN3-246ENST00000636228 ZBTB45Q96K62 511 aaPredicted RBP17.72■□□□□ 0.43
CLN3-246ENST00000636228 UROC1Q96N76 676 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 PLIN2Q99541 437 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 TCHPQ9BT92 498 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 MMTAG2Q9BU76 263 aaKnown RBP17.72■□□□□ 0.43
CLN3-246ENST00000636228 CCDC94Q9BW85 323 aaPredicted RBP17.72■□□□□ 0.43
CLN3-246ENST00000636228 KMT5AQ9NQR1 393 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 SH2B1Q9NRF2 756 aaPredicted RBP17.72■□□□□ 0.43
CLN3-246ENST00000636228 DLGAP2Q9P1A6 1054 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 ZFP37Q9Y6Q3 630 aaPredicted RBP17.72■□□□□ 0.43
CLN3-246ENST00000636228 PHLPP2Q6ZVD8 1323 aa17.72■□□□□ 0.43
CLN3-246ENST00000636228 PODXLO00592 558 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 SLC16A4O15374 487 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 MEFVO15553 781 aaPredicted RBP17.71■□□□□ 0.43
CLN3-246ENST00000636228 MAPK7Q13164 816 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 UVSSAQ2YD98 709 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 PABPC1LQ4VXU2 614 aaKnown RBP17.71■□□□□ 0.43
CLN3-246ENST00000636228 XKR4Q5GH76 650 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 ERICH6BQ5W0A0 696 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 POTEHQ6S545 545 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 C1orf186Q6ZWK4 172 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 APBB1IPQ7Z5R6 666 aaPredicted RBP17.71■□□□□ 0.43
CLN3-246ENST00000636228 KCNG4Q8TDN1 519 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 MCRS1Q96EZ8 462 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 MRPL4Q9BYD3 311 aaKnown RBP17.71■□□□□ 0.43
CLN3-246ENST00000636228 RAB34Q9BZG1 259 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 TMEM134Q9H6X4 195 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 BACE2Q9Y5Z0 518 aa17.71■□□□□ 0.43
CLN3-246ENST00000636228 CFAP54Q96N23 3096 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 ABLIM1O14639 778 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 TRAPPC3O43617 180 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 CD72P21854 359 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 DMP1Q13316 513 aaPredicted RBP17.7■□□□□ 0.42
CLN3-246ENST00000636228 SLC5A9Q2M3M2 681 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 VARS2Q5ST30 1063 aaKnown RBP17.7■□□□□ 0.42
CLN3-246ENST00000636228 MCTP1Q6DN14 999 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 DTHD1Q6ZMT9 781 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 ANKS3Q6ZW76 656 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 NPAS3Q8IXF0 933 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 SNX27Q96L92 541 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.7■□□□□ 0.42
CLN3-246ENST00000636228 TOPORSQ9NS56 1045 aaPredicted RBP17.7■□□□□ 0.42
CLN3-246ENST00000636228 ARHGAP28Q9P2N2 729 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 MTF2Q9Y483 593 aaPredicted RBP17.7■□□□□ 0.42
CLN3-246ENST00000636228 STK24Q9Y6E0 443 aa17.7■□□□□ 0.42
CLN3-246ENST00000636228 COL4A3Q01955 1670 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 WDR27A2RRH5 827 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 MCF2P10911 925 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 PROZP22891 400 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 STARD6P59095 220 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 ROR1Q01973 937 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 SLC44A4Q53GD3 710 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 MTSS1LQ765P7 747 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 PJA1Q8NG27 643 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 DRC1Q96MC2 740 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 ACAP3Q96P50 834 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 PNMA5Q96PV4 448 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 PLA2G2FQ9BZM2 168 aa17.69■□□□□ 0.42
CLN3-246ENST00000636228 MRPS23Q9Y3D9 190 aaKnown RBP17.69■□□□□ 0.42
CLN3-246ENST00000636228 NPHP3-ACAD11A0A0J9YXS1 232 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 SEC24AO95486 1093 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 RHOP08100 348 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 ELF1P32519 619 aa17.68■□□□□ 0.42
CLN3-246ENST00000636228 CACNB1Q02641 598 aaPredicted RBP17.68■□□□□ 0.42
CLN3-246ENST00000636228 MLF2Q15773 248 aaPredicted RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms