RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 OSTNP61366 133 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 TRIM14Q14142 442 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 GPNMBQ14956 572 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 KRT39Q6A163 491 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 SYT10Q6XYQ8 523 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 SV2AQ7L0J3 742 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 WDR49Q8IV35 697 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 CD302Q8IX05 232 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 UBXN4Q92575 508 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 EDEM3Q9BZQ6 932 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 TTYH3Q9C0H2 523 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 PLCB1Q9NQ66 1216 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 CCDC66A2RUB6 948 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 ZNF623O75123 536 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 PARNO95453 639 aaKnown RBP15.28■□□□□ 0.04
CLN3-242ENST00000635958 CXCL8P10145 99 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 MXI1P50539 228 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 CETN1Q12798 172 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 ZACNQ401N2 412 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 EPC2Q52LR7 807 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 TWF2Q6IBS0 349 aaKnown RBP15.28■□□□□ 0.04
CLN3-242ENST00000635958 ALKAL1Q6UXT8 129 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 ZNF771Q7L3S4 317 aaPredicted RBP15.28■□□□□ 0.04
CLN3-242ENST00000635958 LMO3Q8TAP4 145 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 CRACR2AQ9BSW2 395 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 TRIM6Q9C030 488 aaPredicted RBP15.28■□□□□ 0.04
CLN3-242ENST00000635958 TBX21Q9UL17 535 aa15.28■□□□□ 0.04
CLN3-242ENST00000635958 PTPRJQ12913 1337 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 GYPCP04921 128 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 TNNI1P19237 187 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 KLK7P49862 253 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 MYL7Q01449 175 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 ELF2Q15723 593 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 LRRC26Q2I0M4 334 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 FBXO38Q6PIJ6 1188 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 MRPL10Q7Z7H8 261 aaKnown RBP15.27■□□□□ 0.04
CLN3-242ENST00000635958 SMG8Q8ND04 991 aaKnown RBP15.27■□□□□ 0.04
CLN3-242ENST00000635958 EHBP1Q8NDI1 1231 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 MNS1Q8NEH6 495 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 TSPAN18Q96SJ8 248 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 HIPK3Q9H422 1215 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 MMRN2Q9H8L6 949 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 TOPORSQ9NS56 1045 aaPredicted RBP15.27■□□□□ 0.04
CLN3-242ENST00000635958 SNTG2Q9NY99 539 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 CAPN11Q9UMQ6 739 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 IPPQ9Y573 584 aa15.27■□□□□ 0.04
CLN3-242ENST00000635958 A0A1W2PQJ5 194 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 LACTBL1A8MY62 500 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 NOL4O94818 638 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 SLC9A1P19634 815 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 TERF2Q15554 542 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 DUOXA2Q1HG44 320 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 XKR4Q5GH76 650 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 PPFIBP1Q86W92 1011 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 NT5DC4Q86YG4 428 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 NAA15Q9BXJ9 866 aaKnown RBP15.27■□□□□ 0.03
CLN3-242ENST00000635958 IFIH1Q9BYX4 1025 aaKnown RBP15.27■□□□□ 0.03
CLN3-242ENST00000635958 NXF3Q9H4D5 531 aaKnown RBP15.27■□□□□ 0.03
CLN3-242ENST00000635958 FAM105AQ9NUU6 356 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 GCNT4Q9P109 453 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 FBXL5Q9UKA1 691 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 PCDHB2Q9Y5E7 798 aa15.27■□□□□ 0.03
CLN3-242ENST00000635958 ANK1P16157 1881 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 CITO14578 2027 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 A0A0U1RQF3 1178 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 MGEA5O60502 916 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 NBNO60934 754 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 SLC34A2O95436 690 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 RAB27AP51159 221 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 MLLT1Q03111 559 aaPredicted RBP15.26■□□□□ 0.03
CLN3-242ENST00000635958 PLEKHG4Q58EX7 1191 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 FBXL13Q8NEE6 735 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 OR5B17Q8NGF7 314 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 PCMTD1Q96MG8 357 aaPredicted RBP15.26■□□□□ 0.03
CLN3-242ENST00000635958 FTHL17Q9BXU8 183 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 SIX2Q9NPC8 291 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 ATP11BQ9Y2G3 1177 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 DERAQ9Y315 318 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 C2CD2Q9Y426 696 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 DAAM1Q9Y4D1 1078 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 HES2Q9Y543 173 aa15.26■□□□□ 0.03
CLN3-242ENST00000635958 UMODL1Q5DID0 1318 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 RNF225M0QZC1 329 aaPredicted RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 CXCL10P02778 98 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 CLTBP09497 229 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 TRIM21P19474 475 aaKnown RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 EN2P19622 333 aaPredicted RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 FXR1P51114 621 aaKnown RBP eCLIP15.25■□□□□ 0.03
CLN3-242ENST00000635958 YARSP54577 528 aaKnown RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 ZBTB6Q15916 424 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 KLHDC7AQ5VTJ3 777 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 TDRD10Q5VZ19 366 aaKnown RBP15.25■□□□□ 0.03
CLN3-242ENST00000635958 TRIM65Q6PJ69 517 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 TMCO3Q6UWJ1 677 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 REXO1L1PQ8IX06 675 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 EFCAB13Q8IY85 973 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 TC2NQ8N9U0 490 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 NEK11Q8NG66 645 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 FAM212AQ96EL1 285 aa15.25■□□□□ 0.03
CLN3-242ENST00000635958 SNX27Q96L92 541 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms