RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 ZNF397Q8NF99 534 aaPredicted RBP11.52□□□□□ -0.57
CPNE3-212ENST00000621783 DNAJC7Q99615 494 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 APOL6Q9BWW8 343 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 TMX1Q9H3N1 280 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 PRDM10Q9NQV6 1147 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 CHST12Q9NRB3 414 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 RAB20Q9NX57 234 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.52□□□□□ -0.57
CPNE3-212ENST00000621783 APEX2Q9UBZ4 518 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 FBXL5Q9UKA1 691 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 PYCARDQ9ULZ3 195 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 ZKSCAN5Q9Y2L8 839 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 HES2Q9Y543 173 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 IPPQ9Y573 584 aa11.52□□□□□ -0.57
CPNE3-212ENST00000621783 PDCD11Q14690 1871 aaKnown RBP11.51□□□□□ -0.57
CPNE3-212ENST00000621783 NRDCO43847 1150 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 MGEA5O60502 916 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 VNN1O95497 513 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 RFX1P22670 979 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 YARSP54577 528 aaKnown RBP11.51□□□□□ -0.57
CPNE3-212ENST00000621783 DSC3Q14574 896 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 E4F1Q66K89 784 aaPredicted RBP11.51□□□□□ -0.57
CPNE3-212ENST00000621783 CHRDL2Q6WN34 429 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 RRAGAQ7L523 313 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 OR8K1Q8NGG5 319 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 ANKRD36BP1Q96IX9 119 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 NT5C1BQ96P26 610 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 BAG1Q99933 345 aaPredicted RBP11.51□□□□□ -0.57
CPNE3-212ENST00000621783 NAA15Q9BXJ9 866 aaKnown RBP11.51□□□□□ -0.57
CPNE3-212ENST00000621783 MCOLN1Q9GZU1 580 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 ASB7Q9H672 318 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 C11orf49Q9H6J7 331 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.51□□□□□ -0.57
CPNE3-212ENST00000621783 FAM105AQ9NUU6 356 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 DNAJC12Q9UKB3 198 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 DAAM1Q9Y4D1 1078 aa11.51□□□□□ -0.57
CPNE3-212ENST00000621783 CITO14578 2027 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 PITPNM1O00562 1244 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 ZC3H11AO75152 810 aaKnown RBP eCLIP11.5□□□□□ -0.57
CPNE3-212ENST00000621783 PHACTR2O75167 634 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 TNNC2P02585 160 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 SKILP12757 684 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 ZSCAN20P17040 1043 aaPredicted RBP11.5□□□□□ -0.57
CPNE3-212ENST00000621783 AKAP5P24588 427 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 JAM2P57087 298 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 TLE2Q04725 743 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 FAAP100Q0VG06 881 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 NCOA4Q13772 614 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 RAPGEF1Q13905 1077 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 TMEM132DQ14C87 1099 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 DUOXA2Q1HG44 320 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 C1orf53Q5VUE5 145 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 PHLDB3Q6NSJ2 640 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 TRAPPC11Q7Z392 1133 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 GPIHBP1Q8IV16 184 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 CD302Q8IX05 232 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 ELMO3Q96BJ8 720 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 PI4K2AQ9BTU6 479 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 TMEM106CQ9BVX2 250 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 CXCL16Q9H2A7 254 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 PLEKHA5Q9HAU0 1116 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 C1orf112Q9NSG2 853 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 CNTN3Q9P232 1028 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 MYO6Q9UM54 1294 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 C2CD2Q9Y426 696 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 PCDHB2Q9Y5E7 798 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 PCNTO95613 3336 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 UMODL1Q5DID0 1318 aa11.5□□□□□ -0.57
CPNE3-212ENST00000621783 SOWAHDA6NJG2 315 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 DCDC2CA8MYV0 355 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 F8VZ95 297 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 HNRNPH3P31942 346 aaKnown RBP11.49□□□□□ -0.57
CPNE3-212ENST00000621783 RAB27AP51159 221 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 ASIC2Q16515 512 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 MEA1Q16626 185 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 LRRC26Q2I0M4 334 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 TSR1Q2NL82 804 aaKnown RBP11.49□□□□□ -0.57
CPNE3-212ENST00000621783 GLRA4Q5JXX5 417 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 SFMBT2Q5VUG0 894 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 SCARA3Q6AZY7 606 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 WDR59Q6PJI9 974 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 ZSCAN30Q86W11 494 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 NT5DC4Q86YG4 428 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 HACE1Q8IYU2 909 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 TMEM130Q8N3G9 435 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 C1orf127Q8N9H9 656 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 HELQQ8TDG4 1101 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 LINC01599Q8WXQ3 324 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 KAT5Q92993 513 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 KIF12Q96FN5 646 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 PAWRQ96IZ0 340 aaKnown RBP11.49□□□□□ -0.57
CPNE3-212ENST00000621783 ZMAT2Q96NC0 199 aaKnown RBP11.49□□□□□ -0.57
CPNE3-212ENST00000621783 TOX2Q96NM4 488 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 SPAG5Q96R06 1193 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 ADAM2Q99965 735 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 TRAIPQ9BWF2 469 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 IFIH1Q9BYX4 1025 aaKnown RBP11.49□□□□□ -0.57
CPNE3-212ENST00000621783 PPP1R12CQ9BZL4 782 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 GPR88Q9GZN0 384 aa11.49□□□□□ -0.57
CPNE3-212ENST00000621783 NUCKS1Q9H1E3 243 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms