RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PMS1P54277 932 aaKnown RBP14.69□□□□□ -0.06
LINC00540-202ENST00000616974 TFF2Q03403 129 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 PLEKHO2Q8TD55 490 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 ELMO3Q96BJ8 720 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 MRPL38Q96DV4 380 aaKnown RBP14.69□□□□□ -0.06
LINC00540-202ENST00000616974 FAM193BQ96PV7 902 aaPredicted RBP14.69□□□□□ -0.06
LINC00540-202ENST00000616974 PLVAPQ9BX97 442 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 SPG21Q9NZD8 308 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 FAN1Q9Y2M0 1017 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 C2CD2LO14523 706 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 EIF3DO15371 548 aaKnown RBP eCLIP14.68□□□□□ -0.06
LINC00540-202ENST00000616974 EFEMP2O95967 443 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 RB1P06400 928 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 BRCC3P46736 316 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 DLX2Q07687 328 aaPredicted RBP14.68□□□□□ -0.06
LINC00540-202ENST00000616974 TUSC3Q13454 348 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 BMT2Q1RMZ1 405 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 ARMCX5Q6P1M9 558 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 VPS52Q8N1B4 723 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 HVCN1Q96D96 273 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 POP1Q99575 1024 aaKnown RBP14.68□□□□□ -0.06
LINC00540-202ENST00000616974 TCF25Q9BQ70 676 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 PDE11AQ9HCR9 933 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 UBN1Q9NPG3 1134 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 HSPBP1Q9NZL4 362 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 KCNG1Q9UIX4 513 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 KINO60870 393 aaKnown RBP14.68□□□□□ -0.06
LINC00540-202ENST00000616974 CLTAP09496 248 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 KNOP1Q1ED39 458 aaKnown RBP14.68□□□□□ -0.06
LINC00540-202ENST00000616974 VN1R2Q8NFZ6 395 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 KIF12Q96FN5 646 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 SAMD11Q96NU1 681 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 TLR9Q9NR96 1032 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 TOPORSQ9NS56 1045 aaPredicted RBP14.68□□□□□ -0.06
LINC00540-202ENST00000616974 CDH22Q9UJ99 828 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 MAN1B1Q9UKM7 699 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 TSC2P49815 1807 aa14.68□□□□□ -0.06
LINC00540-202ENST00000616974 C2orf16Q68DN1 1984 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 TRIM49BA6NDI0 452 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 ALDH2P05091 517 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 RPL17P18621 184 aaKnown RBP14.67□□□□□ -0.06
LINC00540-202ENST00000616974 POU3F3P20264 500 aaPredicted RBP14.67□□□□□ -0.06
LINC00540-202ENST00000616974 PRCPP42785 496 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 YARSP54577 528 aaKnown RBP14.67□□□□□ -0.06
LINC00540-202ENST00000616974 PLCB3Q01970 1234 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 ZBTB6Q15916 424 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 UPP1Q16831 310 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 HACE1Q8IYU2 909 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 TMEM169Q96HH4 297 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 TIGD1Q96MW7 591 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 IGFLR1Q9H665 355 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 KANSL3Q9P2N6 904 aa14.67□□□□□ -0.06
LINC00540-202ENST00000616974 MTCL1Q9Y4B5 1905 aaKnown RBP14.66□□□□□ -0.06
LINC00540-202ENST00000616974 KCNE1P15382 129 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 HYAL1Q12794 435 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 RTP2Q5QGT7 225 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 FAM43BQ6ZT52 329 aaPredicted RBP14.66□□□□□ -0.06
LINC00540-202ENST00000616974 GLYCTKQ8IVS8 523 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 RNF168Q8IYW5 571 aaPredicted RBP14.66□□□□□ -0.06
LINC00540-202ENST00000616974 SLC17A8Q8NDX2 589 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 MICAL1Q8TDZ2 1067 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 ZBP1Q9H171 429 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 RPF1Q9H9Y2 349 aaKnown RBP14.66□□□□□ -0.06
LINC00540-202ENST00000616974 AAASQ9NRG9 546 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 RNF216Q9NWF9 866 aaPredicted RBP14.66□□□□□ -0.06
LINC00540-202ENST00000616974 RWDD3Q9Y3V2 267 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 FSCN2O14926 492 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 CA8P35219 290 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 HSP90AA2PQ14568 343 aaPredicted RBP14.66□□□□□ -0.06
LINC00540-202ENST00000616974 KCNB1Q14721 858 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 PRSS55Q6UWB4 352 aaPredicted RBP14.66□□□□□ -0.06
LINC00540-202ENST00000616974 TMC7Q7Z402 723 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 OR5B17Q8NGF7 314 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 TMEM206Q9H813 350 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 ENTPD7Q9NQZ7 604 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 ADAM28Q9UKQ2 775 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 EXOC7Q9UPT5 735 aa14.66□□□□□ -0.06
LINC00540-202ENST00000616974 SPTLC1O15269 473 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 B3GAT3O94766 335 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 SLC34A2O95436 690 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 GLP2RO95838 553 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 MYL1P05976 194 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 GARTP22102 1010 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 NRIP1P48552 1158 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 PPP2R3AQ06190 1150 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 ALCAMQ13740 583 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 KANK3Q6NY19 840 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 FUT10Q6P4F1 479 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 TMEM175Q9BSA9 504 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 RBAKQ9NYW8 714 aaPredicted RBP14.65□□□□□ -0.06
LINC00540-202ENST00000616974 PODXLO00592 558 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 DLG4P78352 724 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 SKIV2LQ15477 1246 aaKnown RBP14.65□□□□□ -0.06
LINC00540-202ENST00000616974 CSPP1Q1MSJ5 1256 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 SLFN12LQ6IEE8 588 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 RSPO2Q6UXX9 243 aaPredicted RBP14.65□□□□□ -0.06
LINC00540-202ENST00000616974 DDX53Q86TM3 631 aaKnown RBP14.65□□□□□ -0.06
LINC00540-202ENST00000616974 BRSK2Q8IWQ3 736 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 GPD1LQ8N335 351 aa14.65□□□□□ -0.06
LINC00540-202ENST00000616974 SMARCE1Q969G3 411 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms