RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 H3BQV1 296 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 TRAPPC3O43617 180 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 C1RP00736 705 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 HNRNPA1P09651 372 aaKnown RBP eCLIP19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 FGFR3P22607 806 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 GRM5P41594 1212 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 MATR3P43243 847 aaKnown RBP eCLIP19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 SOX4Q06945 474 aaPredicted RBP19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 HTR4Q13639 388 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 SEZ6Q53EL9 994 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 PARM1Q6UWI2 310 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 RSPO2Q6UXX9 243 aaPredicted RBP19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 DAW1Q8N136 415 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 ITFG1Q8TB96 612 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 ING5Q8WYH8 240 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 NXPE3Q969Y0 559 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 ZBTB45Q96K62 511 aaPredicted RBP19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 DRC1Q96MC2 740 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 TOPORSQ9NS56 1045 aaPredicted RBP19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 ANKFY1Q9P2R3 1169 aa19.28■□□□□ 0.68
SHKBP1-223ENST00000600552 PTPRZ1P23471 2315 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 RAB33AQ14088 237 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 ANGPT1Q15389 498 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 UPP1Q16831 310 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 C8orf34Q49A92 452 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 CD300LGQ6UXG3 332 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 C1orf186Q6ZWK4 172 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 TAS1R3Q7RTX0 852 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 CCDC105Q8IYK2 499 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 C3orf58Q8NDZ4 430 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 CDK5RAP3Q96JB5 506 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 UROC1Q96N76 676 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 ACAP3Q96P50 834 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 MMTAG2Q9BU76 263 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 TMEM134Q9H6X4 195 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 MTRRQ9UBK8 725 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 CDH7Q9ULB5 785 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 KIF3AQ9Y496 699 aa19.27■□□□□ 0.68
SHKBP1-223ENST00000600552 VWA3AA6NCI4 1184 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 LAD1O00515 517 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 PODXLO00592 558 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 DCNP07585 359 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 CACNB1Q02641 598 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 STRN3Q13033 797 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 FGF13Q92913 245 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 FGF14Q92915 247 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 C18orf25Q96B23 403 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 DDX27Q96GQ7 796 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 ZMAT2Q96NC0 199 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 KXD1Q9BQD3 176 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 ARHGEF3Q9NR81 526 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 RBM19Q9Y4C8 960 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 NUB1Q9Y5A7 615 aa19.26■□□□□ 0.67
SHKBP1-223ENST00000600552 MYH11P35749 1972 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 NPHP3-ACAD11A0A0J9YXS1 232 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 ANHXE9PGG2 379 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 MCF2P10911 925 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 ELF1P32519 619 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 PRPHP41219 470 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 GPC5P78333 572 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 MAPK7Q13164 816 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 DHX8Q14562 1220 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 RABEP1Q15276 862 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 PABPC1LQ4VXU2 614 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 MPZL3Q6UWV2 235 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 ANKS3Q6ZW76 656 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 KCNG4Q8TDN1 519 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 NKD2Q969F2 451 aaPredicted RBP19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 MCRS1Q96EZ8 462 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 PNMA5Q96PV4 448 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 PTPRHQ9HD43 1115 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 SLC38A7Q9NVC3 462 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 ARHGAP28Q9P2N2 729 aa19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 DNMT3BQ9UBC3 853 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-223ENST00000600552 PRR23AA6NEV1 266 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 TMEM189-UBE2V1I3L0A0 370 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 PRRG1O14668 218 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 GJB2P29033 226 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 NBL1P41271 181 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 SPAG1Q07617 926 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 SNW1Q13573 536 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 VARS2Q5ST30 1063 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 TMEM130Q8N3G9 435 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 BICD1Q96G01 975 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 SNX27Q96L92 541 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 FOXQ1Q9C009 403 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 MRPS23Q9Y3D9 190 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 ZFP37Q9Y6Q3 630 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 CITO14578 2027 aa19.24■□□□□ 0.67
SHKBP1-223ENST00000600552 PAPLNO95428 1278 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 CENPBP07199 599 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 PLA2G4BP0C869 781 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 MCM4P33991 863 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 SMTNP53814 917 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 UVSSAQ2YD98 709 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 RILPL1Q5EBL4 403 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 ALKAL1Q6UXT8 129 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 TMX3Q96JJ7 454 aa19.23■□□□□ 0.67
SHKBP1-223ENST00000600552 SIT1Q9Y3P8 196 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms