RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 INO80BQ9C086 356 aaPredicted RBP15.38■□□□□ 0.05
SHKBP1-218ENST00000598907 BRD9Q9H8M2 597 aa15.38■□□□□ 0.05
SHKBP1-218ENST00000598907 CHST7Q9NS84 486 aa15.38■□□□□ 0.05
SHKBP1-218ENST00000598907 TBC1D22BQ9NU19 505 aa15.38■□□□□ 0.05
SHKBP1-218ENST00000598907 AGPAT5Q9NUQ2 364 aa15.38■□□□□ 0.05
SHKBP1-218ENST00000598907 MORC2Q9Y6X9 1032 aaPredicted RBP15.38■□□□□ 0.05
SHKBP1-218ENST00000598907 TICRRQ7Z2Z1 1910 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 WDR64B1ANS9 1081 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 MAN2B1O00754 1011 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 ECI2O75521 394 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 TDP2O95551 362 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 HNRNPA1P09651 372 aaKnown RBP eCLIP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 GCFC2P16383 781 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 CREMQ03060 361 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 NBR1Q14596 966 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 PTPAQ15257 358 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 FOXD4L6Q3SYB3 417 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 Q4G0T1 1027 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 PABPC1LQ4VXU2 614 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 FOXD4L3Q6VB84 417 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 ZNF410Q86VK4 478 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 SLC7A14Q8TBB6 771 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 FAM3CQ92520 227 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 DNASE1L2Q92874 299 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 GAD1Q99259 594 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 IER2Q9BTL4 223 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 COLEC11Q9BWP8 271 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 APOL6Q9BWW8 343 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 LSM14BQ9BX40 385 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 TMEM121BQ9BXQ6 578 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 FNIP2Q9P278 1114 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 SUCLA2Q9P2R7 463 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 TFIP11Q9UBB9 837 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 CFAP45Q9UL16 551 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 MRPS23Q9Y3D9 190 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 CLIC4Q9Y696 253 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 COL4A2P08572 1712 aa15.37■□□□□ 0.05
SHKBP1-218ENST00000598907 TMEM8BA6NDV4 472 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 CCNT1O60563 726 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 NR1I2O75469 434 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 BAG4O95429 457 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 ITGA4P13612 1032 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 ATP2B1P20020 1258 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 HOXC13P31276 330 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 DNM2P50570 870 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 KRT85P78386 507 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 GAS6Q14393 721 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 SF3A1Q15459 793 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 ZNF174Q15697 407 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 RTP2Q5QGT7 225 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 UBXN11Q5T124 520 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 TANGO2Q6ICL3 276 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 MRPL10Q7Z7H8 261 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 LONP2Q86WA8 852 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 LENG9Q96B70 501 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 ZFP42Q96MM3 310 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 DISC1Q9NRI5 854 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 CACNG4Q9UBN1 327 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 RCOR1Q9UKL0 485 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 PIAS3Q9Y6X2 628 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 TDRD15B5MCY1 1934 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 AKAP13Q12802 2813 aa15.36■□□□□ 0.05
SHKBP1-218ENST00000598907 ARL5CA6NH57 179 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 SLC37A4O43826 429 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 YEATS4O95619 227 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 C1RP00736 705 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 CNR2P34972 360 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 SETQ01105 290 aaPredicted RBP15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 DSC1Q08554 894 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 SLC39A14Q15043 492 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 PRR16Q569H4 304 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 TCEAL6Q6IPX3 200 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 LINC00301Q8NCQ3 95 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 HASPINQ8TF76 798 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 TCEAL3Q969E4 200 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 RBM12Q9NTZ6 932 aaKnown RBP15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 DNMT3BQ9UBC3 853 aaKnown RBP15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 HES2Q9Y543 173 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 NBEAQ8NFP9 2946 aa15.35■□□□□ 0.05
SHKBP1-218ENST00000598907 DSPP15924 2871 aaKnown RBP15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 K7ESF4 209 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 BMP15O95972 392 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 ZNF806P0C7X5 589 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 CEBPBP17676 345 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 MCM7P33993 719 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 ATP2C1P98194 919 aaPredicted RBP15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 CDC42EP1Q00587 391 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 PTGDRQ13258 359 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 TARBP2Q15633 366 aaKnown RBP15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 SLC5A9Q2M3M2 681 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 RNF43Q68DV7 783 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 Q6ZS52 159 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 CEP57Q86XR8 500 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 SMG8Q8ND04 991 aaKnown RBP15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 MTMR9Q96QG7 549 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 SCAND2PQ9GZW5 306 aaPredicted RBP15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 TMEM60Q9H2L4 133 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 RNF39Q9H2S5 420 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 KCNMB3Q9NPA1 279 aa15.34■□□□□ 0.05
SHKBP1-218ENST00000598907 MIOSQ9NXC5 875 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms