RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SGSM1Q2NKQ1 1148 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 EPC2Q52LR7 807 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 SLC24A5Q71RS6 500 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 TRAPPC11Q7Z392 1133 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 TMEM192Q8IY95 271 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 CCDC112Q8NEF3 446 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 ZNF516Q92618 1163 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 NT5C1BQ96P26 610 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 APOL6Q9BWW8 343 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 TMX1Q9H3N1 280 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 NXF3Q9H4D5 531 aaKnown RBP16.46■□□□□ 0.23
TRIM28-209ENST00000597423 MYO6Q9UM54 1294 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 RECQL4O94761 1208 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 GYPCP04921 128 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 CCDC172P0C7W6 258 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 KCNE1P15382 129 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 KLK7P49862 253 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 MFAP3P55082 362 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 POLR2FP61218 127 aaKnown RBP16.45■□□□□ 0.22
TRIM28-209ENST00000597423 NCOA4Q13772 614 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 LRRC26Q2I0M4 334 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 PLEKHG4Q58EX7 1191 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 SMYD5Q6GMV2 418 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 JADE1Q6IE81 842 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 ALKAL1Q6UXT8 129 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 ENOSF1Q7L5Y1 443 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 SMG8Q8ND04 991 aaKnown RBP16.45■□□□□ 0.22
TRIM28-209ENST00000597423 BEST2Q8NFU1 509 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 TAF4BQ92750 862 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 KIF12Q96FN5 646 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 SNX27Q96L92 541 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 SPAG5Q96R06 1193 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 NAA15Q9BXJ9 866 aaKnown RBP16.45■□□□□ 0.22
TRIM28-209ENST00000597423 CNTN3Q9P232 1028 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 APEX2Q9UBZ4 518 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 TBX21Q9UL17 535 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 HES2Q9Y543 173 aa16.45■□□□□ 0.22
TRIM28-209ENST00000597423 HTTP42858 3142 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 MFAP3LO75121 409 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 HLA-DRAP01903 254 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 UCHL3P15374 230 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 EN2P19622 333 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-209ENST00000597423 AKAP5P24588 427 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 ATICP31939 592 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 ADKP55263 362 aaKnown RBP16.44■□□□□ 0.22
TRIM28-209ENST00000597423 FAM189BP81408 668 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 RBP5P82980 135 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 MBTPS1Q14703 1052 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 XKR4Q5GH76 650 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 TDRD10Q5VZ19 366 aaKnown RBP16.44■□□□□ 0.22
TRIM28-209ENST00000597423 RRAGAQ7L523 313 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 LRRC8AQ8IWT6 810 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 OR5B17Q8NGF7 314 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 TAS1R2Q8TE23 839 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 SYN2Q92777 582 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-209ENST00000597423 RPS6KC1Q96S38 1066 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 STK33Q9BYT3 514 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 PPP1R12CQ9BZL4 782 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 TSPYL2Q9H2G4 693 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-209ENST00000597423 SLC38A7Q9NVC3 462 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 PRKAG2Q9UGJ0 569 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 ITGA11Q9UKX5 1188 aa16.44■□□□□ 0.22
TRIM28-209ENST00000597423 UBQLN1Q9UMX0 589 aaKnown RBP16.44■□□□□ 0.22
TRIM28-209ENST00000597423 KIAA0355O15063 1070 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 NBNO60934 754 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 NOL4O94818 638 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 CLSTN1O94985 981 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 TIMP1P01033 207 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 CXCL10P02778 98 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 NFICP08651 508 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 ACTN1P12814 892 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 P4HA1P13674 534 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 RAG1P15918 1043 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 CYP3A5P20815 502 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 CYP2C18P33260 490 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 FXR1P51114 621 aaKnown RBP eCLIP16.43■□□□□ 0.22
TRIM28-209ENST00000597423 CCL23P55773 120 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 WNT7BP56706 349 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 LMBRD2Q68DH5 695 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-209ENST00000597423 ECHDC2Q86YB7 292 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 RPUSD2Q8IZ73 545 aaKnown RBP16.43■□□□□ 0.22
TRIM28-209ENST00000597423 TMEM199Q8N511 208 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 TC2NQ8N9U0 490 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 LMO3Q8TAP4 145 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 JAKMIP2Q96AA8 810 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 FAXDC2Q96IV6 333 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 TTYH3Q9C0H2 523 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 MTMR12Q9C0I1 747 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 GANQ9H2C0 597 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 UBE2TQ9NPD8 197 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-209ENST00000597423 DPP3Q9NY33 737 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 DNAJC12Q9UKB3 198 aa16.43■□□□□ 0.22
TRIM28-209ENST00000597423 SMIM28A0A1B0GU29 152 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 ENPP3O14638 875 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 MGEA5O60502 916 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 KRT19P08727 400 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 ATF7P17544 494 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-209ENST00000597423 TBXAS1P24557 533 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-209ENST00000597423 STAT1P42224 750 aa16.42■□□□□ 0.22
TRIM28-209ENST00000597423 MYO1EQ12965 1108 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms