RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 RNF39Q9H2S5 420 aa15.94■□□□□ 0.14
SHKBP1-211ENST00000595945 TBX21Q9UL17 535 aa15.94■□□□□ 0.14
SHKBP1-211ENST00000595945 LUC7L2Q9Y383 392 aaKnown RBP15.94■□□□□ 0.14
SHKBP1-211ENST00000595945 IPPQ9Y573 584 aa15.94■□□□□ 0.14
SHKBP1-211ENST00000595945 NBNO60934 754 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 ZNF623O75123 536 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 RECQL4O94761 1208 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 HLA-DRAP01903 254 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 NFICP08651 508 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 TPM1P09493 284 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 UCHL3P15374 230 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 KRT9P35527 623 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 DUOXA2Q1HG44 320 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 LRRC26Q2I0M4 334 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 JADE1Q6IE81 842 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 NT5DC4Q86YG4 428 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 TMEM139Q8IV31 216 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 FAM212AQ96EL1 285 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 TRIM6Q9C030 488 aaPredicted RBP15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 FAM105AQ9NUU6 356 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 RAB20Q9NX57 234 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 CNTN3Q9P232 1028 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 AJAP1Q9UKB5 411 aaPredicted RBP15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 DERAQ9Y315 318 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 C2CD2Q9Y426 696 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 HES2Q9Y543 173 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 PCDHB2Q9Y5E7 798 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 FHOD1Q9Y613 1164 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 BRCA2P51587 3418 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 UMODL1Q5DID0 1318 aa15.93■□□□□ 0.14
SHKBP1-211ENST00000595945 ZC3H11AO75152 810 aaKnown RBP eCLIP15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 ZSCAN20P17040 1043 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 HNRNPH3P31942 346 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 RAB27AP51159 221 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 POLR2FP61218 127 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 CCZ1BP86790 482 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 CCZ1P86791 482 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 LRMPQ12912 555 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 ZBTB6Q15916 424 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 PDXDC1Q6P996 788 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 TRAPPC11Q7Z392 1133 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 NECAB2Q7Z6G3 386 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 CXorf38Q8TB03 319 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 ZNF830Q96NB3 372 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 TSPAN18Q96SJ8 248 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 MTMR12Q9C0I1 747 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 WNT8AQ9H1J5 351 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 CXCL16Q9H2A7 254 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 ABHD10Q9NUJ1 306 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 APEX2Q9UBZ4 518 aa15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.92■□□□□ 0.14
SHKBP1-211ENST00000595945 CXCL10P02778 98 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 TMEM191BP0C7N4 346 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 KCNE1P15382 129 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 RFX1P22670 979 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 YARSP54577 528 aaKnown RBP15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 JAM2P57087 298 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 BIRC3Q13489 604 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 TMEM132DQ14C87 1099 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 PLEKHG4Q58EX7 1191 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 SCARA3Q6AZY7 606 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 IQCEQ6IPM2 695 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 PHLDB3Q6NSJ2 640 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 GJB7Q6PEY0 223 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 RTN4RL1Q86UN2 441 aaPredicted RBP15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 ARHGEF19Q8IW93 802 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 C1orf127Q8N9H9 656 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 OR8K1Q8NGG5 319 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 LINC01599Q8WXQ3 324 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 ANKRD36BP1Q96IX9 119 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 IFIH1Q9BYX4 1025 aaKnown RBP15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 HIPK3Q9H422 1215 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 RGS18Q9NS28 235 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 SIX4Q9UIU6 781 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 MYO6Q9UM54 1294 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 ATP11BQ9Y2G3 1177 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 LTBP2Q14767 1821 aa15.91■□□□□ 0.14
SHKBP1-211ENST00000595945 A0A0U1RQF3 1178 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 PARNO95453 639 aaKnown RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 TNNC2P02585 160 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 ATF7P17544 494 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 AKAP5P24588 427 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 PIK3CAP42336 1068 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 FAM189BP81408 668 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 TFAMQ00059 246 aaKnown RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 MEA1Q16626 185 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 E4F1Q66K89 784 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 ZNF598Q86UK7 904 aaKnown RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 CCDC112Q8NEF3 446 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 ZNF397Q8NF99 534 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 HELQQ8TDG4 1101 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 SYN2Q92777 582 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 TRIM44Q96DX7 344 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 ZMAT2Q96NC0 199 aaKnown RBP15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 NT5C1BQ96P26 610 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 ADAM2Q99965 735 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 APOL6Q9BWW8 343 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 NLRC4Q9NPP4 1024 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 DNAJC12Q9UKB3 198 aa15.9■□□□□ 0.14
SHKBP1-211ENST00000595945 PLAGL2Q9UPG8 496 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms