RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 DOLKQ9UPQ8 538 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 SUGT1Q9Y2Z0 365 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 PCDHGA4Q9Y5G9 962 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 ZBED4O75132 1171 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 SERPINB2P05120 415 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 KRT5P13647 590 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 ATF7P17544 494 aaPredicted RBP13.01□□□□□ -0.33
LIG1-207ENST00000594759 CCR3P51677 355 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 SLC45A4Q5BKX6 768 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 CENPUQ71F23 418 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 PYROXD1Q8WU10 500 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 RNF25Q96BH1 459 aaPredicted RBP13.01□□□□□ -0.33
LIG1-207ENST00000594759 APPL1Q9UKG1 709 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 STARD13Q9Y3M8 1113 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 UCHL3P15374 230 aa13□□□□□ -0.33
LIG1-207ENST00000594759 PRDX5P30044 214 aa13□□□□□ -0.33
LIG1-207ENST00000594759 NUP107P57740 925 aa13□□□□□ -0.33
LIG1-207ENST00000594759 TRIM28Q13263 835 aaKnown RBP13□□□□□ -0.33
LIG1-207ENST00000594759 ITPK1Q13572 414 aa13□□□□□ -0.33
LIG1-207ENST00000594759 CYFIP1Q7L576 1253 aa13□□□□□ -0.33
LIG1-207ENST00000594759 TTC25Q96NG3 672 aa13□□□□□ -0.33
LIG1-207ENST00000594759 YIPF2Q9BWQ6 316 aa13□□□□□ -0.33
LIG1-207ENST00000594759 C10orf88Q9H8K7 445 aa13□□□□□ -0.33
LIG1-207ENST00000594759 CNGB3Q9NQW8 809 aa13□□□□□ -0.33
LIG1-207ENST00000594759 EPS15L1Q9UBC2 864 aa13□□□□□ -0.33
LIG1-207ENST00000594759 MST1RQ04912 1400 aa13□□□□□ -0.33
LIG1-207ENST00000594759 CLIC2O15247 247 aa13□□□□□ -0.33
LIG1-207ENST00000594759 GJB6O95452 261 aa13□□□□□ -0.33
LIG1-207ENST00000594759 ASMTLO95671 621 aa13□□□□□ -0.33
LIG1-207ENST00000594759 ALADP13716 330 aa13□□□□□ -0.33
LIG1-207ENST00000594759 S100A1P23297 94 aa13□□□□□ -0.33
LIG1-207ENST00000594759 RPL21P46778 160 aaKnown RBP13□□□□□ -0.33
LIG1-207ENST00000594759 NEK2P51955 445 aa13□□□□□ -0.33
LIG1-207ENST00000594759 BPIFB4P59827 614 aa13□□□□□ -0.33
LIG1-207ENST00000594759 TSPY1Q01534 308 aa13□□□□□ -0.33
LIG1-207ENST00000594759 OCA2Q04671 838 aa13□□□□□ -0.33
LIG1-207ENST00000594759 RINLQ6ZS11 566 aa13□□□□□ -0.33
LIG1-207ENST00000594759 TBCKQ8TEA7 893 aa13□□□□□ -0.33
LIG1-207ENST00000594759 PCDH18Q9HCL0 1135 aa13□□□□□ -0.33
LIG1-207ENST00000594759 TRPC5Q9UL62 973 aaPredicted RBP13□□□□□ -0.33
LIG1-207ENST00000594759 APOBEC2Q9Y235 224 aaKnown RBP13□□□□□ -0.33
LIG1-207ENST00000594759 MYH8P13535 1937 aa13□□□□□ -0.33
LIG1-207ENST00000594759 HNRNPH3P31942 346 aaKnown RBP13□□□□□ -0.33
LIG1-207ENST00000594759 CHN2P52757 468 aa13□□□□□ -0.33
LIG1-207ENST00000594759 ALX1Q15699 326 aa13□□□□□ -0.33
LIG1-207ENST00000594759 ADRM1Q16186 407 aa13□□□□□ -0.33
LIG1-207ENST00000594759 FAM186BQ8IYM0 893 aa13□□□□□ -0.33
LIG1-207ENST00000594759 ZFRQ96KR1 1074 aaKnown RBP13□□□□□ -0.33
LIG1-207ENST00000594759 RBM15Q96T37 977 aaKnown RBP eCLIP13□□□□□ -0.338e-6■□□□□ 8.4
LIG1-207ENST00000594759 SELENONQ9NZV5 590 aa13□□□□□ -0.33
LIG1-207ENST00000594759 TXNDC16Q9P2K2 825 aa13□□□□□ -0.33
LIG1-207ENST00000594759 FRMD4AQ9P2Q2 1039 aaPredicted RBP13□□□□□ -0.33
LIG1-207ENST00000594759 AGTPBP1Q9UPW5 1226 aa13□□□□□ -0.33
LIG1-207ENST00000594759 SLIT1O75093 1534 aa13□□□□□ -0.33
LIG1-207ENST00000594759 TTC4O95801 387 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 RCAN1P53805 252 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 CCDC15Q0P6D6 951 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 ACAP1Q15027 740 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 PFKFB3Q16875 520 aaPredicted RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 IZUMO3Q5VZ72 239 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 THOC7Q6I9Y2 204 aaKnown RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 LPCAT2Q7L5N7 544 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 TMPRSS6Q8IU80 811 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 CATSPER1Q8NEC5 780 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 MKNK1Q9BUB5 465 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 HEMGNQ9BXL5 484 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 MRPL46Q9H2W6 279 aaKnown RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 CAAP1Q9H8G2 361 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 MANSC1Q9H8J5 431 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 SLCO1B3Q9NPD5 702 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 TIMMDC1Q9NPL8 285 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 PCDHA12Q9UN75 941 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 KIAA1024Q9UPX6 916 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 HBS1LQ9Y450 684 aaKnown RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 ALG6Q9Y672 507 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 NMT2O60551 498 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 LPXNO60711 386 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 ANPEPP15144 967 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 COILP38432 576 aaPredicted RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 CYP2J2P51589 502 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 NAA20P61599 178 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 YWHAGP61981 247 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG1-207ENST00000594759 ZYXQ15942 572 aaKnown RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 ARHGAP27Q6ZUM4 889 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 SRBD1Q8N5C6 995 aaKnown RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 SH3TC2Q8TF17 1288 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 ARHGEF1Q92888 912 aaKnown RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 PRPF18Q99633 342 aaKnown RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 C7orf25Q9BPX7 421 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 RRN3Q9NYV6 651 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 TTC7AQ9ULT0 858 aaPredicted RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 DNM3Q9UQ16 869 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 JCADQ9P266 1359 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.99□□□□□ -0.33
LIG1-207ENST00000594759 TOM1L1O75674 476 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 ASLP04424 464 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 MAPK4P31152 587 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 ITGA8P53708 1063 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 ARPC4P59998 168 aa12.99□□□□□ -0.33
LIG1-207ENST00000594759 CTTNQ14247 550 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms