RNA–Protein interactions for RNA: ENST00000591383.1

VPS4B-205, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 701 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-205ENST00000591383 ARSHQ5FYA8 562 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 ODR4Q5SWX8 454 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 CNKSR3Q6P9H4 555 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 C1orf186Q6ZWK4 172 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 OTOP2Q7RTS6 562 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 RPAINQ86UA6 219 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 FAM228AQ86W67 206 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 NME8Q8N427 588 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 MYCT1Q8N699 235 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 BICD1Q96G01 975 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 CCDC34Q96HJ3 373 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 RNPC3Q96LT9 517 aaKnown RBP7.04□□□□□ -1.28
VPS4B-205ENST00000591383 CEP63Q96MT8 703 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 C2orf40Q9H1Z8 148 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 ADAMTS10Q9H324 1103 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 SUV39H2Q9H5I1 410 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 AGO3Q9H9G7 860 aaKnown RBP7.04□□□□□ -1.28
VPS4B-205ENST00000591383 PARVGQ9HBI0 331 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 TIMMDC1Q9NPL8 285 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 KMT5AQ9NQR1 393 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 EXOC1Q9NV70 894 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 ABI2Q9NYB9 513 aaPredicted RBP7.04□□□□□ -1.28
VPS4B-205ENST00000591383 TBC1D7Q9P0N9 293 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 USP25Q9UHP3 1055 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 ODF2LQ9ULJ1 636 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 HPSEQ9Y251 543 aa7.04□□□□□ -1.28
VPS4B-205ENST00000591383 NOC2LQ9Y3T9 749 aaKnown RBP7.04□□□□□ -1.28
VPS4B-205ENST00000591383 DENND3A2RUS2 1198 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 CAPN5O15484 640 aaPredicted RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 ASAP2O43150 1006 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 ZNF202O95125 648 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PARNO95453 639 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PFKMP08237 780 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 HARSP12081 509 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 BMP2P12643 396 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PLS3P13797 630 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 RHOQP17081 205 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 GAP43P17677 238 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 ATF4P18848 351 aaPredicted RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 NPTX2P47972 431 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PTENP60484 403 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 AMPD3Q01432 767 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 MBTD1Q05BQ5 628 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 STRN3Q13033 797 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 COASYQ13057 564 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 CUL4BQ13620 913 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 GIT2Q14161 759 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 POSTNQ15063 836 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 TCTN1Q2MV58 587 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 LONRF3Q496Y0 759 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 CDCA2Q69YH5 1023 aaPredicted RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 TWF2Q6IBS0 349 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 KRBA2Q6ZNG9 492 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 FAM178BQ8IXR5 827 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 CCDC65Q8IXS2 484 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 RPUSD2Q8IZ73 545 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 FMR1NBQ8N0W7 255 aaPredicted RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 RNF169Q8NCN4 708 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 DBF4BQ8NFT6 615 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PMEPA1Q969W9 287 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 CCDC47Q96A33 483 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PAGE5Q96GU1 130 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.03□□□□□ -1.289e-7■□□□□ 10.7
VPS4B-205ENST00000591383 TRIM9Q9C026 710 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 LRRC27Q9C0I9 530 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 MTIF3Q9H2K0 278 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 MINDY3Q9H8M7 445 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 MRPL44Q9H9J2 332 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 ERVK-5Q9HDB9 667 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PANK4Q9NVE7 773 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 KBTBD4Q9NVX7 518 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 DACT1Q9NYF0 836 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 LARSQ9P2J5 1176 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 ANKFY1Q9P2R3 1169 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 HOOK1Q9UJC3 728 aaKnown RBP7.03□□□□□ -1.28
VPS4B-205ENST00000591383 PADI3Q9ULW8 664 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 ST3GAL5Q9UNP4 418 aa7.03□□□□□ -1.28
VPS4B-205ENST00000591383 CNTNAP2Q9UHC6 1331 aa7.02□□□□□ -1.28
VPS4B-205ENST00000591383 RALGAPA2Q2PPJ7 1873 aa7.02□□□□□ -1.28
VPS4B-205ENST00000591383 FAM237AA0A1B0GTK4 181 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 HNRNPDLO14979 420 aaKnown RBP7.02□□□□□ -1.29
VPS4B-205ENST00000591383 B4GALT5O43286 388 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 MGEA5O60502 916 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 TSPAN1O60635 241 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 GCNT3O95395 438 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 CXCL10P02778 98 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 NMT1P30419 496 aaKnown RBP7.02□□□□□ -1.29
VPS4B-205ENST00000591383 MATR3P43243 847 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS4B-205ENST00000591383 ZNF131P52739 623 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 EFNA5P52803 228 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 WDR5P61964 334 aaKnown RBP7.02□□□□□ -1.29
VPS4B-205ENST00000591383 DEFB103AP81534 67 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 CDC42EP1Q00587 391 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 PNOCQ13519 176 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 PRPF4BQ13523 1007 aaKnown RBP7.02□□□□□ -1.29
VPS4B-205ENST00000591383 MAPK6Q16659 721 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 PLEKHG4Q58EX7 1191 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 HERC4Q5GLZ8 1057 aaPredicted RBP7.02□□□□□ -1.29
VPS4B-205ENST00000591383 FAM26FQ5R3K3 315 aa7.02□□□□□ -1.29
VPS4B-205ENST00000591383 C9orf50Q5SZB4 431 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms