RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	NECAB3	Q96P71	396 aa	Predicted RBP	10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	C7orf25	Q9BPX7	421 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	MSTO1	Q9BUK6	570 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	HERC2P3	Q9BVR0	1158 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	EMILIN2	Q9BXX0	1053 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	IKZF4	Q9H2S9	585 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	PLEKHA5	Q9HAU0	1116 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	GOLGA2P5	Q9HBQ8	144 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	CHST7	Q9NS84	486 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	SLC38A7	Q9NVC3	462 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	FAM50B	Q9Y247	325 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	SSX2IP	Q9Y2D8	614 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	PCDHB13	Q9Y5F0	798 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	HCFC2	Q9Y5Z7	792 aa		10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239	SF3B1	O75533	1304 aa	Known RBP eCLIP	10.03	□□□□□ -0.8
DNMT1-223	ENST00000591239		A0A1B0GVL5	298 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	TTC26	A0AVF1	554 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	TISP43	B9A030	160 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	MBTPS2	O43462	519 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	B3GAT3	O94766	335 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	CNP	P09543	421 aa	Known RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	SLFN14	P0C7P3	912 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	CXCL8	P10145	99 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	MYB	P10242	640 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	IL9	P15248	144 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	PFKFB1	P16118	471 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	IGFBP6	P24592	240 aa	Predicted RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	KLRC2	P26717	231 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	TNFSF9	P41273	254 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	AFM	P43652	599 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	GLUD2	P49448	558 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	CLCNKB	P51801	687 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	ASIC1	P78348	528 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	DSG1	Q02413	1049 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	SOX4	Q06945	474 aa	Predicted RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	SMAD4	Q13485	552 aa	Known RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	ALCAM	Q13740	583 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	ENOX2	Q16206	610 aa	Known RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	UPP1	Q16831	310 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	USP41	Q3LFD5	358 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	ZBTB41	Q5SVQ8	909 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	SLFN12L	Q6IEE8	588 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	DCLRE1A	Q6PJP8	1040 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	CEP57L1	Q8IYX8	460 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	C18orf25	Q96B23	403 aa	Predicted RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	DDX27	Q96GQ7	796 aa	Known RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	B3GALT6	Q96L58	329 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	KLHL5	Q96PQ7	755 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	ACCS	Q96QU6	501 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	FGFBP2	Q9BYJ0	223 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	RPF1	Q9H9Y2	349 aa	Known RBP	10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	GDPD2	Q9HCC8	539 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	SERTAD1	Q9UHV2	236 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	EXOC7	Q9UPT5	735 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	STYXL1	Q9Y6J8	313 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	CIT	O14578	2027 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	NCOR1	O75376	2440 aa		10.02	□□□□□ -0.81
DNMT1-223	ENST00000591239	TCHH	Q07283	1943 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	LACTBL1	A8MY62	500 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	TMEM189-UBE2V1	I3L0A0	370 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	TEX28	O15482	410 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	ACTN4	O43707	911 aa	Known RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	ADRB2	P07550	413 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	EPCAM	P16422	314 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	HOXB8	P17481	243 aa	Predicted RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	CASP1	P29466	404 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	ADSS	P30520	456 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	RPL9	P32969	192 aa	Known RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	ACOT2	P49753	483 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	CLCN4	P51793	760 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	PPP2R3A	Q06190	1150 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	ELAVL2	Q12926	359 aa	Known RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	POSTN	Q15063	836 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	SMAD2	Q15796	467 aa	Known RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	FAM171A1	Q5VUB5	890 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	ANKRD54	Q6NXT1	300 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	PPFIBP1	Q86W92	1011 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	GPR65	Q8IYL9	337 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	GRAMD1C	Q8IYS0	662 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	SYCP3	Q8IZU3	236 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	SLC22A17	Q8WUG5	538 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	RIN2	Q8WYP3	895 aa	Predicted RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	POMGNT1	Q8WZA1	660 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	CASP10	Q92851	521 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	HPS3	Q969F9	1004 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	KIF12	Q96FN5	646 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	TTPAL	Q9BTX7	342 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	S1PR5	Q9H228	398 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	BLZF1	Q9H2G9	400 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	RXFP1	Q9HBX9	757 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	USP25	Q9UHP3	1055 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	CPSF3	Q9UKF6	684 aa	Known RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	AGO2	Q9UKV8	859 aa	Known RBP	10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	HPSE	Q9Y251	543 aa		10.01	□□□□□ -0.81
DNMT1-223	ENST00000591239	FAM237A	A0A1B0GTK4	181 aa		10	□□□□□ -0.81
DNMT1-223	ENST00000591239		A0A1W2PQ27	194 aa		10	□□□□□ -0.81
DNMT1-223	ENST00000591239		A0A1W2PQ64	194 aa		10	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms