RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 TRIOBPQ9H2D6 2365 aa11.34□□□□□ -0.59
VPS4B-204ENST00000589604 A0A1W2PQJ5 194 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 GTPBP10A4D1E9 387 aaKnown RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 KIAA0391O15091 583 aaKnown RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 GPR182O15218 404 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 PMM2O15305 246 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 TOM1L1O75674 476 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 SLC9A1P19634 815 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 PON1P27169 355 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 ENPEPQ07075 957 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 MCL1Q07820 350 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 TCERG1LQ5VWI1 586 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 LMO3Q8TAP4 145 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 KIAA1524Q8TCG1 905 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 BAP1Q92560 729 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 DNAJC7Q99615 494 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 FAM213AQ9BRX8 229 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 NUP58Q9BVL2 599 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 EIF2AQ9BY44 585 aaKnown RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 GANQ9H2C0 597 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 TSPYL2Q9H2G4 693 aaPredicted RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 MMRN2Q9H8L6 949 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 PRMT7Q9NVM4 692 aaPredicted RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 PIN4Q9Y237 131 aaKnown RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 LRRIQ3A6PVS8 624 aaPredicted RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 MEIS3P2A8K0S8 358 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 GRXCR1A8MXD5 290 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 C9IYK1 514 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 SKILP12757 684 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 ACTN1P12814 892 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 ATF7P17544 494 aaPredicted RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 KRT9P35527 623 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 ACOT2P49753 483 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 CLDN10P78369 228 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 IKBKEQ14164 716 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 WDR59Q6PJI9 974 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF516Q92618 1163 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 APBB2Q92870 758 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 EDEM3Q9BZQ6 932 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 PDZD7Q9H5P4 517 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 KIAA1586Q9HCI6 787 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 PLCB1Q9NQ66 1216 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 RGS18Q9NS28 235 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 FAM207AQ9NSI2 230 aaPredicted RBP11.33□□□□□ -0.6
VPS4B-204ENST00000589604 ABHD10Q9NUJ1 306 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 TNFSF13BQ9Y275 285 aa11.33□□□□□ -0.6
VPS4B-204ENST00000589604 CNTNAP2Q9UHC6 1331 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 TTC3P53804 2025 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 GBF1Q92538 1859 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 ABHD14A-ACY1A0A1B0GW23 586 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF233A6NK53 670 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 ZBBXA8MT70 800 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 CLDN3O15551 220 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 LRRN2O75325 713 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 KRT13P13646 458 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 TNFSF9P41273 254 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 GATMP50440 423 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 FAM189BP81408 668 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 ZBED6P86452 979 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 PRPF4BQ13523 1007 aaKnown RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 PSMD6Q15008 389 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 EXOC3L4Q17RC7 722 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 EPC2Q52LR7 807 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 ATF7IP2Q5U623 682 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 KLHDC7AQ5VTJ3 777 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 E4F1Q66K89 784 aaPredicted RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 MPZL3Q6UWV2 235 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 GBP6Q6ZN66 633 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 C15orf39Q6ZRI6 1047 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 CNGA4Q8IV77 575 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 C17orf53Q8N3J3 647 aaPredicted RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 CCDC51Q96ER9 411 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 RNPC3Q96LT9 517 aaKnown RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 PRIMPOLQ96LW4 560 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 POP1Q99575 1024 aaKnown RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 MSTO1Q9BUK6 570 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 LSM14BQ9BX40 385 aaKnown RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 TMEM117Q9H0C3 514 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 TOPORSQ9NS56 1045 aaPredicted RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 RNF19AQ9NV58 838 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 ANKFY1Q9P2R3 1169 aa11.32□□□□□ -0.6
VPS4B-204ENST00000589604 AJAP1Q9UKB5 411 aaPredicted RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 LUC7L2Q9Y383 392 aaKnown RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 PDCD11Q14690 1871 aaKnown RBP11.32□□□□□ -0.6
VPS4B-204ENST00000589604 A0A1B0GUA9 196 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 OGTO15294 1046 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 MEFVO15553 781 aaPredicted RBP11.31□□□□□ -0.6
VPS4B-204ENST00000589604 STX10O60499 249 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 BAIAP3O94812 1187 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 ERLIN2O94905 339 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 LDHAP00338 332 aaKnown RBP11.31□□□□□ -0.6
VPS4B-204ENST00000589604 TRIM21P19474 475 aaKnown RBP11.31□□□□□ -0.6
VPS4B-204ENST00000589604 IBSPP21815 317 aaPredicted RBP11.31□□□□□ -0.6
VPS4B-204ENST00000589604 HNRNPH3P31942 346 aaKnown RBP11.31□□□□□ -0.6
VPS4B-204ENST00000589604 GCLMP48507 274 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 MEA1Q16626 185 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 SEZ6Q53EL9 994 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 ZBTB33Q86T24 672 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 TDHQ8IZJ6 230 aa11.31□□□□□ -0.6
VPS4B-204ENST00000589604 SMG8Q8ND04 991 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 160.2 ms