RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CCDC51Q96ER9 411 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 LOXL4Q96JB6 756 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 TCEANC2Q96MN5 208 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PANX2Q96RD6 677 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 NELL2Q99435 816 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SEMA4CQ9C0C4 833 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PRORYQ9H606 182 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PDE11AQ9HCR9 933 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 MCM9Q9NXL9 1143 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CDC23Q9UJX2 597 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PCDHGC3Q9UN70 934 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 FAN1Q9Y2M0 1017 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 MRPS17Q9Y2R5 130 aaKnown RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 CREBBPQ92793 2442 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 COL5A1P20908 1838 aaPredicted RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 NRCAMQ92823 1304 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 STK36Q9NRP7 1315 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 MYH7BA7E2Y1 1941 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 A0A1B0GVL5 298 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 TARSL2A2RTX5 802 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 ANHXE9PGG2 379 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 HAS3O00219 553 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 RPP40O75818 363 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 CLSTN1O94985 981 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 ZNF202O95125 648 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 CHRNA1P02708 482 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 CYP21A2P08686 494 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 SMIM10L2AP0DMW4 78 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 SMIM10L2BP0DMW5 78 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 MYF5P13349 255 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 LAMP2P13473 410 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 ZNF18P17022 549 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 CD52P31358 61 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 SYKP43405 635 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 RAP1GAPP47736 663 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 PXNP49023 591 aaPredicted RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 EXOSC10Q01780 885 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 PFKPQ01813 784 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 CEBPZQ03701 1054 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 KLRC3Q07444 240 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 IKQ13123 557 aaPredicted RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 G3BP1Q13283 466 aaKnown RBP eCLIP4.57□□□□□ -1.68
LIG3-211ENST00000588713 FZD5Q13467 585 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 TRIM14Q14142 442 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 CASP8Q14790 479 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 ZNF423Q2M1K9 1284 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 TKFCQ3LXA3 575 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 MCMDC2Q4G0Z9 681 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 FAM102BQ5T8I3 360 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 PARM1Q6UWI2 310 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 RSPO2Q6UXX9 243 aaPredicted RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 CCNI2Q6ZMN8 369 aaPredicted RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 GBP6Q6ZN66 633 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 STOX1Q6ZVD7 989 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 SPATS2Q86XZ4 545 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 PNPLA1Q8N8W4 532 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 TC2NQ8N9U0 490 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 ZSCAN1Q8NBB4 408 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 SLC22A17Q8WUG5 538 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 BAP1Q92560 729 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 FGF14Q92915 247 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 EAF2Q96CJ1 260 aaPredicted RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 LIN37Q96GY3 246 aaPredicted RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 C8orf76Q96K31 380 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 ZFP42Q96MM3 310 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 WDR24Q96S15 920 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 MPHOSPH6Q99547 160 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 KANSL2Q9H9L4 492 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 WDR6Q9NNW5 1121 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 HEBP1Q9NRV9 189 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 HELLSQ9NRZ9 838 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 TCP11L1Q9NUJ3 509 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 INTS13Q9NVM9 706 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 TLR7Q9NYK1 1049 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 L1RE1Q9UN81 338 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 PA2G4Q9UQ80 394 aaKnown RBP4.57□□□□□ -1.68
LIG3-211ENST00000588713 AKAP2Q9Y2D5 859 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 PCDHB7Q9Y5E2 793 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 PCDHGA5Q9Y5G8 931 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 TAF6LQ9Y6J9 622 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 NOTCH2Q04721 2471 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 DNHD1Q96M86 4753 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 PTPRQQ9UMZ3 2332 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 DOPEY2Q9Y3R5 2298 aa4.57□□□□□ -1.68
LIG3-211ENST00000588713 NAV1Q8NEY1 1877 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 ZMYM6O95789 1325 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 A0A087WWV3 80 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 A0A1B0GTH6 734 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CCDC196A0A1B0GTZ2 297 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CCDC195A0A1B0GUA6 201 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 TEX51A0A1B0GUA7 166 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CTAGE15A4D2H0 777 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 CTAGE9A4FU28 777 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 A6NNZ2 444 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 TMEM232C9JQI7 657 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 AKR1B15C9JRZ8 316 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 CDX4O14627 284 aaPredicted RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 CLGNO14967 610 aa4.56□□□□□ -1.68
LIG3-211ENST00000588713 KHNYNO15037 678 aaKnown RBP4.56□□□□□ -1.68
LIG3-211ENST00000588713 MFAP3LO75121 409 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms