RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 TSPY26PQ9H489 355 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 DHX33Q9H6R0 707 aaKnown RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 SLC39A2Q9NP94 309 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 XPNPEP1Q9NQW7 623 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SUCLA2Q9P2R7 463 aaPredicted RBP5.84□□□□□ -1.47
LIG3-210ENST00000588109 HDAC6Q9UBN7 1215 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 SEL1LQ9UBV2 794 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 KCNG1Q9UIX4 513 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 OGDHLQ9ULD0 1010 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 MAPK8IP1Q9UQF2 711 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 AKT3Q9Y243 479 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 GDAQ9Y2T3 454 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 STARD13Q9Y3M8 1113 aa5.84□□□□□ -1.47
LIG3-210ENST00000588109 A0A0U1RQG5 324 aaPredicted RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 FRMD3A2A2Y4 597 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 LRRIQ4A6NIV6 560 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 H0YCG3 227 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 J3QW42 95 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PSMA7O14818 248 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 TREHO43280 583 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 FZD6O60353 706 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 KIF20AO95235 890 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 SRGAP2CP0DJJ0 459 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 CES1P23141 567 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 NMT1P30419 496 aaKnown RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 ARL2P36404 184 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PPP1R2P41236 205 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 NAMPTP43490 491 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 ZNF131P52739 623 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 RTP1P59025 263 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PTPN11Q06124 597 aaPredicted RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 LAMTOR4Q0VGL1 99 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 STK4Q13043 487 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 MAPK7Q13164 816 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 DRP2Q13474 957 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 MXD4Q14582 209 aaPredicted RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 PTGISQ16647 500 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PRRT3Q5FWE3 981 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 MARCH8Q5T0T0 291 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 KLHL10Q6JEL2 608 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 XKR5Q6UX68 686 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 RSPH3Q86UC2 560 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 ALYREFQ86V81 257 aaKnown RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 ZBTB8OSQ8IWT0 167 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 MYOCDQ8IZQ8 938 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 SYCP3Q8IZU3 236 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 DAW1Q8N136 415 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 MLKLQ8NB16 471 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 SLC17A8Q8NDX2 589 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 ASAP3Q8TDY4 903 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PRPF31Q8WWY3 499 aaKnown RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 NLRP4Q96MN2 994 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 CEP89Q96ST8 783 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PPP1R16BQ96T49 567 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 KIFC3Q9BVG8 833 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 SENP6Q9GZR1 1112 aaPredicted RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 SMG9Q9H0W8 520 aaKnown RBP5.83□□□□□ -1.48
LIG3-210ENST00000588109 DNAJC25Q9H1X3 360 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 C17orf75Q9HAS0 396 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 KMT5AQ9NQR1 393 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PDLIM7Q9NR12 457 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 OLFML3Q9NRN5 406 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 FRRS1LQ9P0K9 344 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 GTF2IRD1Q9UHL9 959 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 GINS2Q9Y248 185 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 PCDHA2Q9Y5H9 948 aa5.83□□□□□ -1.48
LIG3-210ENST00000588109 KAT6AQ92794 2004 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 MYH11P35749 1972 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 IGKV6-21A0A0C4DH24 114 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 SMIM35A0A1B0GVV1 85 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 DENND3A2RUS2 1198 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 SOWAHDA6NJG2 315 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 BECN2A8MW95 431 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 M0QZ92 97 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 ARVCFO00192 962 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 SLC16A4O15374 487 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 ASAP2O43150 1006 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 PHACTR2O75167 634 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 PRPF6O94906 941 aaKnown RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 CAVIN2O95810 425 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 VTNP04004 478 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 MYBP10242 640 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 BMP6P22004 513 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 GLRA2P23416 452 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 ABCD1P33897 745 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 PRCPP42785 496 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 NPTX2P47972 431 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 GJA8P48165 433 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 ZNF165P49910 485 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 CASP5P51878 434 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 NCKAP1LP55160 1127 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 TPM4P67936 248 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 ZNF200P98182 395 aaPredicted RBP5.82□□□□□ -1.48
LIG3-210ENST00000588109 CDC42EP1Q00587 391 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 TMEM62Q0P6H9 643 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 STRN3Q13033 797 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 PAK1Q13153 545 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 ALCAMQ13740 583 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 CAPSQ13938 189 aa5.82□□□□□ -1.48
LIG3-210ENST00000588109 TPD52L1Q16890 204 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms