RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 LDHAP00338 332 aaKnown RBP11.85□□□□□ -0.51
CLIP3-203ENST00000586457 GLUD1P00367 558 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 KCNE1P15382 129 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 MTHFRP42898 656 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 AFMP43652 599 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 RBM10P98175 930 aaKnown RBP11.85□□□□□ -0.51
CLIP3-203ENST00000586457 DSG1Q02413 1049 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 RARS2Q5T160 578 aaKnown RBP11.85□□□□□ -0.51
CLIP3-203ENST00000586457 KIAA0319Q5VV43 1072 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 RESP18Q5W5W9 173 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 MAP4K3Q8IVH8 894 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 GLYCTKQ8IVS8 523 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 ADHFE1Q8IWW8 467 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 SMRP1Q8NCR6 262 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 DNAJC19Q96DA6 116 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 MSLNLQ96KJ4 702 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 B3GALT6Q96L58 329 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 FBXL18Q96ME1 805 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 NECTIN4Q96NY8 510 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 PAAF1Q9BRP4 392 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 GPR62Q9BZJ7 368 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 PIDD1Q9HB75 910 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 OLFML3Q9NRN5 406 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 CACNG4Q9UBN1 327 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 USP25Q9UHP3 1055 aa11.85□□□□□ -0.51
CLIP3-203ENST00000586457 USP15Q9Y4E8 981 aaPredicted RBP11.85□□□□□ -0.51
CLIP3-203ENST00000586457 TCF20Q9UGU0 1960 aaKnown RBP11.85□□□□□ -0.51
CLIP3-203ENST00000586457 A0A087X0B3 334 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 A0A0B4J269 797 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 F8W810 466 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 PODXLO00592 558 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 TEX28O15482 410 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 GLP2RO95838 553 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 PIGRP01833 764 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 CXCL8P10145 99 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 EPCAMP16422 314 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 CMA1P23946 247 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 MCM4P33991 863 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 ACOT2P49753 483 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 CBX2Q14781 532 aaPredicted RBP11.84□□□□□ -0.51
CLIP3-203ENST00000586457 PSMD5Q16401 504 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 UPP1Q16831 310 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 SLC10A6Q3KNW5 377 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 AXDND1Q5T1B0 1012 aaPredicted RBP11.84□□□□□ -0.51
CLIP3-203ENST00000586457 L1TD1Q5T7N2 865 aaKnown RBP11.84□□□□□ -0.51
CLIP3-203ENST00000586457 ALKAL1Q6UXT8 129 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.84□□□□□ -0.51
CLIP3-203ENST00000586457 GPR65Q8IYL9 337 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 BEST2Q8NFU1 509 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 LEO1Q8WVC0 666 aaPredicted RBP11.84□□□□□ -0.51
CLIP3-203ENST00000586457 RPGRIP1Q96KN7 1286 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 VN1R3Q9BXE9 311 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 ADAM7Q9H2U9 754 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 SFXN1Q9H9B4 322 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 GOLGA2P5Q9HBQ8 144 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 CHST7Q9NS84 486 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 KBTBD4Q9NVX7 518 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 CNTN3Q9P232 1028 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 FNIP2Q9P278 1114 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 UBQLN1Q9UMX0 589 aaKnown RBP11.84□□□□□ -0.51
CLIP3-203ENST00000586457 NR2E1Q9Y466 385 aa11.84□□□□□ -0.51
CLIP3-203ENST00000586457 MYO7AQ13402 2215 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 REV3LO60673 3130 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 A0A1B0GVL5 298 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 LACTBL1A8MY62 500 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 ANKRD63C9JTQ0 380 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 H7C4K7 107 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 SLFN14P0C7P3 912 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 SPATA31D3P0C874 917 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 ALADP13716 330 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 ELF1P32519 619 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 TNFSF9P41273 254 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 SYKP43405 635 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 CLCN4P51793 760 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 SPAG1Q07617 926 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 XKR4Q5GH76 650 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 LIN9Q5TKA1 542 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 TMC5Q6UXY8 1006 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 DSTYKQ6XUX3 929 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 SPATA31D4Q6ZUB0 917 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 ANKS3Q6ZW76 656 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 USP37Q86T82 979 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 C12orf76Q8N812 135 aaPredicted RBP11.83□□□□□ -0.52
CLIP3-203ENST00000586457 APPL2Q8NEU8 664 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 VN1R2Q8NFZ6 395 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 SLC22A17Q8WUG5 538 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 KCNN1Q92952 543 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 C18orf25Q96B23 403 aaPredicted RBP11.83□□□□□ -0.52
CLIP3-203ENST00000586457 C7orf25Q9BPX7 421 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 PHF7Q9BWX1 381 aaPredicted RBP11.83□□□□□ -0.52
CLIP3-203ENST00000586457 TRIM9Q9C026 710 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 CXCL16Q9H2A7 254 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 PLEKHA4Q9H4M7 779 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 RXFP1Q9HBX9 757 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 MAN1C1Q9NR34 630 aa11.83□□□□□ -0.52
CLIP3-203ENST00000586457 CCDC195A0A1B0GUA6 201 aa11.82□□□□□ -0.52
CLIP3-203ENST00000586457 ARHGEF37A1IGU5 675 aa11.82□□□□□ -0.52
CLIP3-203ENST00000586457 TMEM189-UBE2V1I3L0A0 370 aa11.82□□□□□ -0.52
CLIP3-203ENST00000586457 ABLIM1O14639 778 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms