RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ANKS3Q6ZW76 656 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 ERMP1Q7Z2K6 904 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 C1orf210Q8IVY1 113 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 C4orf32Q8N8J7 132 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 DDX27Q96GQ7 796 aaKnown RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 RPP25Q9BUL9 199 aaKnown RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 DDX23Q9BUQ8 820 aaKnown RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 AVENQ9NQS1 362 aaPredicted RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 TOPORSQ9NS56 1045 aaPredicted RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 USP20Q9Y2K6 914 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 ZNF292O60281 2723 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 DCHS1Q96JQ0 3298 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 K7ERI5 159 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 DCNP07585 359 aaKnown RBP13.04□□□□□ -0.32
LIG3-209ENST00000586435 GLULP15104 373 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 PFKPQ01813 784 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 PRKCQQ04759 706 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 PDIA5Q14554 519 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 PABPC1LQ4VXU2 614 aaKnown RBP13.04□□□□□ -0.32
LIG3-209ENST00000586435 SLC8B1Q6J4K2 584 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 ALKAL1Q6UXT8 129 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 RSPO2Q6UXX9 243 aaPredicted RBP13.04□□□□□ -0.32
LIG3-209ENST00000586435 CCDC83Q8IWF9 413 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 NPAS3Q8IXF0 933 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 IGSF22Q8N9C0 903 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 C3orf58Q8NDZ4 430 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 ITFG1Q8TB96 612 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 CCDC94Q9BW85 323 aaPredicted RBP13.04□□□□□ -0.32
LIG3-209ENST00000586435 OSBPL6Q9BZF3 934 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 RAB34Q9BZG1 259 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 CDT1Q9H211 546 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 TMEM134Q9H6X4 195 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 PTPRHQ9HD43 1115 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 ARHGAP28Q9P2N2 729 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 DNMT3BQ9UBC3 853 aaKnown RBP13.04□□□□□ -0.32
LIG3-209ENST00000586435 LRWD1Q9UFC0 647 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 NOL7Q9UMY1 257 aaKnown RBP13.04□□□□□ -0.32
LIG3-209ENST00000586435 POLIQ9UNA4 740 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 KIAA1024Q9UPX6 916 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 CDY1Q9Y6F8 540 aa13.04□□□□□ -0.32
LIG3-209ENST00000586435 COL4A3Q01955 1670 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 SMIM28A0A1B0GU29 152 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 KANSL1LA0AUZ9 987 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 ARHGEF37A1IGU5 675 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 SP9P0CG40 484 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 IGFBP6P24592 240 aaPredicted RBP13.03□□□□□ -0.32
LIG3-209ENST00000586435 TKTP29401 623 aaKnown RBP13.03□□□□□ -0.32
LIG3-209ENST00000586435 MAGEA9P43362 315 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 ID4P47928 161 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 YARSP54577 528 aaKnown RBP13.03□□□□□ -0.32
LIG3-209ENST00000586435 MLF2Q15773 248 aaPredicted RBP13.03□□□□□ -0.32
LIG3-209ENST00000586435 ZNF568Q3ZCX4 644 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 SPECC1Q5M775 1068 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 BORCS6Q96GS4 357 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 ACO2Q99798 780 aaKnown RBP13.03□□□□□ -0.32
LIG3-209ENST00000586435 FOXQ1Q9C009 403 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 C17orf75Q9HAS0 396 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 GOLGA2P5Q9HBQ8 144 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 DDX19AQ9NUU7 478 aaKnown RBP13.03□□□□□ -0.32
LIG3-209ENST00000586435 SLC38A7Q9NVC3 462 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 HCFC1R1Q9NWW0 138 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 PPP4R2Q9NY27 417 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 F5P12259 2224 aa13.03□□□□□ -0.32
LIG3-209ENST00000586435 COL4A2P08572 1712 aa13.02□□□□□ -0.32
LIG3-209ENST00000586435 LAD1O00515 517 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 ABLIM1O14639 778 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 SYN3O14994 580 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 ECI2O75521 394 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 ABLIM3O94929 683 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 PROZP22891 400 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 U2AF2P26368 475 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIG3-209ENST00000586435 BRCC3P46736 316 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 NPTX2P47972 431 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 PEX3P56589 373 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 ROR1Q01973 937 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 SOX4Q06945 474 aaPredicted RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 DMP1Q13316 513 aaPredicted RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 GNL2Q13823 731 aaKnown RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 ZNF528Q3MIS6 628 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 TAS1R3Q7RTX0 852 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 DAW1Q8N136 415 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 CEP120Q8N960 986 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 ST13P5Q8NFI4 369 aaPredicted RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 ZNF461Q8TAF7 563 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 SNX29Q8TEQ0 813 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 ZSCAN31Q96LW9 406 aaPredicted RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 DRC1Q96MC2 740 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 MRPL4Q9BYD3 311 aaKnown RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 POLD4Q9HCU8 107 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 SH2B1Q9NRF2 756 aaPredicted RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 GDE1Q9NZC3 331 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 CNTN3Q9P232 1028 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 MRPS23Q9Y3D9 190 aaKnown RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 RBM19Q9Y4C8 960 aaKnown RBP13.02□□□□□ -0.33
LIG3-209ENST00000586435 R4GN57 208 aa13.02□□□□□ -0.33
LIG3-209ENST00000586435 CEP250Q9BV73 2442 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 WDR27A2RRH5 827 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 CCDC169A6NNP5 214 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 PODXLO00592 558 aa13.01□□□□□ -0.33
LIG3-209ENST00000586435 TBC1D4O60343 1298 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms