RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 TGM1P22735 817 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 ELF1P32519 619 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 TXKP42681 527 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 SPEM2Q0P670 501 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 FZD5Q13467 585 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 NAB2Q15742 525 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 CALCRLQ16602 461 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 MAPK6Q16659 721 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 FAM187BQ17R55 369 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 MAMSTRQ6ZN01 415 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 ANKS3Q6ZW76 656 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 NOSTRINQ8IVI9 506 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 CELF5Q8N6W0 485 aaKnown RBP10.96□□□□□ -0.65
RFFL-208ENST00000581039 MCPH1Q8NEM0 835 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 DNASE1L2Q92874 299 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 C2orf40Q9H1Z8 148 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 CXCL16Q9H2A7 254 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 PDZD7Q9H5P4 517 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 TTC12Q9H892 705 aaPredicted RBP10.96□□□□□ -0.65
RFFL-208ENST00000581039 BRD9Q9H8M2 597 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 ZFP14Q9HCL3 533 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 GPRC5CQ9NQ84 441 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 AVENQ9NQS1 362 aaPredicted RBP10.96□□□□□ -0.65
RFFL-208ENST00000581039 GJB4Q9NTQ9 266 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 NDRG2Q9UN36 371 aaKnown RBP10.96□□□□□ -0.65
RFFL-208ENST00000581039 BACE2Q9Y5Z0 518 aa10.96□□□□□ -0.65
RFFL-208ENST00000581039 MIA3Q5JRA6 1907 aa10.96□□□□□ -0.66
RFFL-208ENST00000581039 MYH15Q9Y2K3 1946 aa10.96□□□□□ -0.66
RFFL-208ENST00000581039 COL4A3Q01955 1670 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 TTLL13PA6NNM8 815 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 ACKR2O00590 384 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 PRRG1O14668 218 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 ZNF197O14709 1029 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 RBM25P49756 843 aaKnown RBP10.95□□□□□ -0.66
RFFL-208ENST00000581039 LPAL2Q16609 132 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 SLC5A9Q2M3M2 681 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 EARS2Q5JPH6 523 aaKnown RBP10.95□□□□□ -0.66
RFFL-208ENST00000581039 CDCA2Q69YH5 1023 aaPredicted RBP10.95□□□□□ -0.66
RFFL-208ENST00000581039 LAIR1Q6GTX8 287 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 ZNF461Q8TAF7 563 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 WASF1Q92558 559 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 IRF7Q92985 503 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 CHAMP1Q96JM3 812 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 UROC1Q96N76 676 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 IER2Q9BTL4 223 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 TRMT61BQ9BVS5 477 aaKnown RBP10.95□□□□□ -0.66
RFFL-208ENST00000581039 LMAN1LQ9HAT1 526 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 BRMS1Q9HCU9 246 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 PARD6AQ9NPB6 346 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 PDRG1Q9NUG6 133 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 DAXXQ9UER7 740 aaPredicted RBP10.95□□□□□ -0.66
RFFL-208ENST00000581039 GDAQ9Y2T3 454 aa10.95□□□□□ -0.66
RFFL-208ENST00000581039 STK36Q9NRP7 1315 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 ARHGEF37A1IGU5 675 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 FAM205CA6NFA0 338 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 TMEM189-UBE2V1I3L0A0 370 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 PRKCBP05771 671 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 RETP07949 1114 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 ADRB1P08588 477 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 CEBPBP17676 345 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 IGFBP6P24592 240 aaPredicted RBP10.94□□□□□ -0.66
RFFL-208ENST00000581039 TKTP29401 623 aaKnown RBP10.94□□□□□ -0.66
RFFL-208ENST00000581039 KRT2P35908 639 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 CCR3P51677 355 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 CLCNKBP51801 687 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 SCRN1Q12765 414 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 GRM2Q14416 872 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 UPP1Q16831 310 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 ST3GAL2Q16842 350 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 FAM78AQ5JUQ0 283 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 CYP4A22Q5TCH4 519 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 PRR23BQ6ZRT6 265 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 APBB1IPQ7Z5R6 666 aaPredicted RBP10.94□□□□□ -0.66
RFFL-208ENST00000581039 DEPTORQ8TB45 409 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 NETO1Q8TDF5 533 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 FAM3CQ92520 227 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 NACC1Q96RE7 527 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 CORO1BQ9BR76 489 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 TM6SF1Q9BZW5 370 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 CHRDQ9H2X0 955 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 USP20Q9Y2K6 914 aa10.94□□□□□ -0.66
RFFL-208ENST00000581039 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.93□□□□□ -0.66
RFFL-208ENST00000581039 SHISA7A6NL88 538 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 I3L4J1 428 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 SLC30A4O14863 429 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 EPB41L2O43491 1005 aaKnown RBP10.93□□□□□ -0.66
RFFL-208ENST00000581039 NEMFO60524 1076 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 LRP3O75074 770 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 MICAL2O94851 1124 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 ABLIM3O94929 683 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 TDGF1P13385 188 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 PSMC3P17980 439 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 GDI1P31150 447 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 CXCL12P48061 93 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 ARPP19P56211 112 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 ROR1Q01973 937 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 NR5A1Q13285 461 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 SIM2Q14190 667 aaPredicted RBP10.93□□□□□ -0.66
RFFL-208ENST00000581039 DCAF4L1Q3SXM0 396 aa10.93□□□□□ -0.66
RFFL-208ENST00000581039 PPM1JQ5JR12 505 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms