RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 HSD3B7Q9H2F3 369 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 MRPL44Q9H9J2 332 aaKnown RBP11.1□□□□□ -0.63
SS18-210ENST00000578700 PARVGQ9HBI0 331 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 ANKEF1Q9NU02 776 aa11.1□□□□□ -0.63
SS18-210ENST00000578700 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.1□□□□□ -0.634e-6■■■□□ 17.6
SS18-210ENST00000578700 DNAH14Q0VDD8 3507 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 COL1A2P08123 1366 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 NPHP3-ACAD11A0A0J9YXS1 232 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 A0A1B0GTH6 734 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.09□□□□□ -0.63
SS18-210ENST00000578700 FRMD3A2A2Y4 597 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 ZBTB42B2RXF5 422 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 PES1O00541 588 aaKnown RBP11.09□□□□□ -0.63
SS18-210ENST00000578700 PI15O43692 258 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 C22orf31O95567 290 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 GNA14O95837 355 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 EPCAMP16422 314 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 GUCY2CP25092 1073 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 TMOD1P28289 359 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 YWHABP31946 246 aaKnown RBP11.09□□□□□ -0.63
SS18-210ENST00000578700 MTIF2P46199 727 aaKnown RBP11.09□□□□□ -0.63
SS18-210ENST00000578700 BCAR1P56945 870 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 EHHADHQ08426 723 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 ALCAMQ13740 583 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 ARSHQ5FYA8 562 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 CLLU1OSQ5K130 101 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 FKBP15Q5T1M5 1219 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 CENPPQ6IPU0 288 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 TTI2Q6NXR4 508 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 PADI6Q6TGC4 694 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 TMC5Q6UXY8 1006 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 VPS52Q8N1B4 723 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 PLCD3Q8N3E9 789 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 BBXQ8WY36 941 aaPredicted RBP11.09□□□□□ -0.63
SS18-210ENST00000578700 TMEM169Q96HH4 297 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 DRC1Q96MC2 740 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 MED15Q96RN5 788 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 MAP7D2Q96T17 732 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 RUSC1Q9BVN2 902 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 OLFML3Q9NRN5 406 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 TBC1D7Q9P0N9 293 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 LARSQ9P2J5 1176 aaKnown RBP11.09□□□□□ -0.63
SS18-210ENST00000578700 GABBR1Q9UBS5 961 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 FBXL21Q9UKT6 434 aa11.09□□□□□ -0.63
SS18-210ENST00000578700 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.09□□□□□ -0.63
SS18-210ENST00000578700 TRIM49BA6NDI0 452 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 CALUO43852 315 aaPredicted RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 ZC3H11AO75152 810 aaKnown RBP eCLIP11.08□□□□□ -0.64
SS18-210ENST00000578700 CSDE1O75534 798 aaKnown RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 GCNT3O95395 438 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 PRKCSHP14314 528 aaPredicted RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 RPL13P26373 211 aaKnown RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 CLCN5P51795 746 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 COPB1P53618 953 aaKnown RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 FKBP3Q00688 224 aaKnown RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 TRIM14Q14142 442 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 NR1I3Q14994 352 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 KRT31Q15323 416 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 XKR9Q5GH70 373 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 ANKRD40Q6AI12 368 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 C1orf186Q6ZWK4 172 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 SFR1Q86XK3 245 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 ZDHHC14Q8IZN3 488 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 CCDC112Q8NEF3 446 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 FEZF2Q8TBJ5 459 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 HPS3Q969F9 1004 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 ACSF2Q96CM8 615 aaPredicted RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 NAP1L5Q96NT1 182 aaPredicted RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 GBP3Q9H0R5 595 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 CYP26B1Q9NR63 512 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 KCNG1Q9UIX4 513 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 PCDHB13Q9Y5F0 798 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 EP300Q09472 2414 aaPredicted RBP11.08□□□□□ -0.64
SS18-210ENST00000578700 UBE4BO95155 1302 aa11.08□□□□□ -0.64
SS18-210ENST00000578700 LRRC10BA6NIK2 292 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 CETN3O15182 167 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 EIF3DO15371 548 aaKnown RBP eCLIP11.07□□□□□ -0.64
SS18-210ENST00000578700 MAGEB2O15479 319 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 EOMESO95936 686 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 MYBP10242 640 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 RFX1P22670 979 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 EIF4BP23588 611 aaKnown RBP11.07□□□□□ -0.64
SS18-210ENST00000578700 UBXN1Q04323 297 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 CCDC40Q4G0X9 1142 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 KIAA1841Q6NSI8 718 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 LRRC8AQ8IWT6 810 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 GOLGA5Q8TBA6 731 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 NLRP7Q8WX94 980 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 CNOT6LQ96LI5 555 aaKnown RBP11.07□□□□□ -0.64
SS18-210ENST00000578700 CEP63Q96MT8 703 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 DUSP9Q99956 384 aaKnown RBP11.07□□□□□ -0.64
SS18-210ENST00000578700 TUBGCP2Q9BSJ2 902 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 VPS16Q9H269 839 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 ADAMTS10Q9H324 1103 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 RTN4Q9NQC3 1192 aaKnown RBP11.07□□□□□ -0.64
SS18-210ENST00000578700 DZANK1Q9NVP4 752 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 TAB2Q9NYJ8 693 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 INPP5FQ9Y2H2 1132 aa11.07□□□□□ -0.64
SS18-210ENST00000578700 DENND4AQ7Z401 1863 aa11.06□□□□□ -0.64
SS18-210ENST00000578700 A0A0U1RQF3 1178 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms