RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 FKBP15Q5T1M5 1219 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 CENPPQ6IPU0 288 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 TTI2Q6NXR4 508 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 PADI6Q6TGC4 694 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 TMC5Q6UXY8 1006 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 VPS52Q8N1B4 723 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 PLCD3Q8N3E9 789 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 BBXQ8WY36 941 aaPredicted RBP11.09□□□□□ -0.63
SS18-207ENST00000577636 TMEM169Q96HH4 297 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 DRC1Q96MC2 740 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 MED15Q96RN5 788 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 MAP7D2Q96T17 732 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 RUSC1Q9BVN2 902 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 OLFML3Q9NRN5 406 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 TBC1D7Q9P0N9 293 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 LARSQ9P2J5 1176 aaKnown RBP11.09□□□□□ -0.63
SS18-207ENST00000577636 GABBR1Q9UBS5 961 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 FBXL21Q9UKT6 434 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.09□□□□□ -0.632e-6■■□□□ 14.5
SS18-207ENST00000577636 ZFHX2Q9C0A1 2572 aaPredicted RBP11.09□□□□□ -0.63
SS18-207ENST00000577636 MYO10Q9HD67 2058 aa11.08□□□□□ -0.63
SS18-207ENST00000577636 FNDC1Q4ZHG4 1894 aaPredicted RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 CFAP54Q96N23 3096 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 TRIM49BA6NDI0 452 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 CALUO43852 315 aaPredicted RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 ZC3H11AO75152 810 aaKnown RBP eCLIP11.08□□□□□ -0.64
SS18-207ENST00000577636 CSDE1O75534 798 aaKnown RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 GCNT3O95395 438 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 PRKCSHP14314 528 aaPredicted RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 RPL13P26373 211 aaKnown RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 CLCN5P51795 746 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 COPB1P53618 953 aaKnown RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 FKBP3Q00688 224 aaKnown RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 TRIM14Q14142 442 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 NR1I3Q14994 352 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 KRT31Q15323 416 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 XKR9Q5GH70 373 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 ANKRD40Q6AI12 368 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 FAM43BQ6ZT52 329 aaPredicted RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 C1orf186Q6ZWK4 172 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 SFR1Q86XK3 245 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 ZDHHC14Q8IZN3 488 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 CCDC112Q8NEF3 446 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 FEZF2Q8TBJ5 459 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 HPS3Q969F9 1004 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 ACSF2Q96CM8 615 aaPredicted RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 NAP1L5Q96NT1 182 aaPredicted RBP11.08□□□□□ -0.64
SS18-207ENST00000577636 GBP3Q9H0R5 595 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 CYP26B1Q9NR63 512 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 KCNG1Q9UIX4 513 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 PCDHB13Q9Y5F0 798 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 UBE4BO95155 1302 aa11.08□□□□□ -0.64
SS18-207ENST00000577636 LRRC10BA6NIK2 292 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 CETN3O15182 167 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 EIF3DO15371 548 aaKnown RBP eCLIP11.07□□□□□ -0.64
SS18-207ENST00000577636 MAGEB2O15479 319 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 EOMESO95936 686 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 MYBP10242 640 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 RFX1P22670 979 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 EIF4BP23588 611 aaKnown RBP11.07□□□□□ -0.64
SS18-207ENST00000577636 UBXN1Q04323 297 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 CCDC40Q4G0X9 1142 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 KIAA1841Q6NSI8 718 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 LRRC8AQ8IWT6 810 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 GOLGA5Q8TBA6 731 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 NLRP7Q8WX94 980 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 CNOT6LQ96LI5 555 aaKnown RBP11.07□□□□□ -0.64
SS18-207ENST00000577636 CEP63Q96MT8 703 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 DUSP9Q99956 384 aaKnown RBP11.07□□□□□ -0.64
SS18-207ENST00000577636 TUBGCP2Q9BSJ2 902 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 VPS16Q9H269 839 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 ADAMTS10Q9H324 1103 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 RTN4Q9NQC3 1192 aaKnown RBP11.07□□□□□ -0.64
SS18-207ENST00000577636 DZANK1Q9NVP4 752 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 TAB2Q9NYJ8 693 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 INPP5FQ9Y2H2 1132 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 EVPLQ92817 2033 aa11.07□□□□□ -0.64
SS18-207ENST00000577636 PLXNA3P51805 1871 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 A0A0U1RQF3 1178 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 PDXKO00764 312 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 USO1O60763 962 aaKnown RBP11.06□□□□□ -0.64
SS18-207ENST00000577636 KLRC2P26717 231 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 ABCD1P33897 745 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 RARRES1P49788 294 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 DNM2P50570 870 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 SMTNP53814 917 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 PMS1P54277 932 aaKnown RBP11.06□□□□□ -0.64
SS18-207ENST00000577636 RNASELQ05823 741 aaKnown RBP11.06□□□□□ -0.64
SS18-207ENST00000577636 ANGPT1Q15389 498 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 KNOP1Q1ED39 458 aaKnown RBP11.06□□□□□ -0.64
SS18-207ENST00000577636 TSR1Q2NL82 804 aaKnown RBP11.06□□□□□ -0.64
SS18-207ENST00000577636 EDRF1Q3B7T1 1238 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 XKR3Q5GH77 459 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 CWF19L1Q69YN2 538 aaKnown RBP11.06□□□□□ -0.64
SS18-207ENST00000577636 HS2ST1Q7LGA3 356 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 ERMP1Q7Z2K6 904 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 TMEM173Q86WV6 379 aaPredicted RBP11.06□□□□□ -0.64
SS18-207ENST00000577636 NELFCDQ8IXH7 590 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 SIX5Q8N196 739 aa11.06□□□□□ -0.64
SS18-207ENST00000577636 LPPQ93052 612 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms